ToDD: Topological Compound Fingerprinting in Computer-Aided Drug Discovery. - Andac Demir; Baris Coskunuzer; Yulia R. Gel; Ignacio Segovia-Dominguez; Yuzhou Chen; Bulent Kiziltan (NeurIPS, 2022)

EEG-NeXt: A Modernized ConvNet for The Classification of Cognitive Activity from EEG. - Andac Demir; Iya Khalil; Bulent Kiziltan (CoRR, 2022)

Topology-Aware Focal Loss for 3D Image Segmentation. - Andac Demir; Elie Massaad; Bulent Kiziltan (CVPR Workshops, 2023)

Multiparameter Persistent Homology for Molecular Property Prediction. - Andac Demir; Bulent Kiziltan (CoRR, 2023)

SE(3)-Invariant Multiparameter Persistent Homology for Chiral-Sensitive Molecular Property Prediction. - Andac Demir; Francis Prael III; Bulent Kiziltan (CoRR, 2023)

sc-OTGM: Single-Cell Perturbation Modeling by Solving Optimal Mass Transport on the Manifold of Gaussian Mixtures. - Andac Demir; Elizaveta Solovyeva; James Boylan; Mei Xiao; Fabrizio Serluca; Sebastian Hoersch; Jeremy Jenkins; Murthy V. Devarakonda; Bulent Kiziltan (CoRR, 2024)