Minimum Energy Configurations of the 2-Dimensional HP-Model of Proteins by Self-Organizing Networks. - Berrin A. Yanikoglu; Burak Erman (J. Comput. Biol., 2002)

The elastic net algorithm and protein structure prediction. - Keith D. Ball; Burak Erman; Ken A. Dill (J. Comput. Chem., 2002)

Folding Dynamics of Proteins from Denatured to Native State: Principal Component Analysis. - Ahmet Palazoglu; Attila Gürsoy; Yaman Arkun; Burak Erman (J. Comput. Biol., 2004)

DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues. - Pemra Ozbek; Seren Soner; Burak Erman; Turkan Haliloglu (Nucleic Acids Res., 2010)

Predicting Important Residues and Interaction Pathways in Proteins Using Gaussian Network Model: Binding and Stability of HLA Proteins. - Turkan Haliloglu; Ahmet Gül; Burak Erman (PLoS Comput. Biol., 2010)

Statistical Mechanics of Proteins in the Random Coil State. - Cigdem Sevim Bayrak; Burak Erman (BIOINFORMATICS, 2012)

Simulation of temporal stochastic phenomena in electronic and biological systems: a comparative review, examples and synergies. - Alper Demir 001; Burak Erman (ICCAD, 2013)

Unified Modeling of Familial Mediterranean Fever and Cryopyrin Associated Periodic Syndromes. - Yasemin Bozkurt; Alper Demir 001; Burak Erman; Ahmet Gül (Comput. Math. Methods Medicine, 2015)

Entropy Transfer between Residue Pairs and Allostery in Proteins: Quantifying Allosteric Communication in Ubiquitin. - Aysima Hacisuleyman; Burak Erman (PLoS Comput. Biol., 2017)

Binding Mechanism of Neutralizing Nanobodies Targeting SARS-CoV-2 Spike Glycoprotein. - Mert Golcuk; Aysima Hacisuleyman; Burak Erman; Ahmet Yildiz; Mert Gur (J. Chem. Inf. Model., 2021)

Prediction of allosteric communication pathways in proteins. - Turkan Haliloglu; Aysima Hacisuleyman; Burak Erman (Bioinform., 2022)

Dynamic correlations: exact and approximate methods for mutual information. - Kemal Demirtas; Burak Erman; Türkan Haliloglu (Bioinform., 2024)