Comparative analysis of metazoan chromatin organization Open. - Joshua Wing Kei Ho; Youngsook L. Jung; Tao Liu 022; Burak Han Alver; Soohyun Lee; Kohta Ikegami; Kyung-Ah Sohn; Aki Minoda; Michael Y. Tolstorukov; Alex Appert; Stephen C. J. Parker; Tingting Gu; et al. (Nat., 2014)

EMSAR: estimation of transcript abundance from RNA-seq data by mappability-based segmentation and reclustering. - Soohyun Lee; Chae Hwa Seo; Burak Han Alver; Sanghyuk Lee; Peter J. Park (BMC Bioinform., 2015)

Tibanna: software for scalable execution of portable pipelines on the cloud. - Soohyun Lee; Jeremy Johnson; Carl Vitzthum; Koray Kirli; Burak Han Alver; Peter J. Park (Bioinform., 2019)

GiniQC: a measure for quantifying noise in single-cell Hi-C data. - Connor A. Horton; Burak Han Alver; Peter J. Park (Bioinform., 2020)

HiTea: a computational pipeline to identify non-reference transposable element insertions in Hi-C data. - Dhawal Jain; Chong Chu; Burak Han Alver; Soohyun Lee; Eunjung Alice Lee; Peter J. Park (Bioinform., 2021)

Pairs and Pairix: a file format and a tool for efficient storage and retrieval for Hi-C read pairs. - Soohyun Lee; Clara R. Bakker; Carl Vitzthum; Burak Han Alver; Peter J. Park (Bioinform., 2022)