Deltr: Digital embryo lineage tree reconstructor. - Xinghua Lou; Frederik O. Kaster; Martin S. Lindner; Bernhard X. Kausler; Ullrich Köthe; Burkhard Hockendorf; Jochen Wittbrodt; Heike Jänicke; Fred A. Hamprecht (ISBI, 2011)

Similarity analysis of cell movements in video microscopy. - Jens Fangerau; Burkhard Hockendorf; Joachim Wittbrodt; Heike Leitte (BioVis, 2012)

Visualization Software for 3D Video Microscopy: A Design Study. - Heike Leitte; Jens Fangerau; Xinghua Lou; Burkhard Höckendorf; Steffen Lemke 002; Alexis Maizel; Jochen Wittbrodt (EuroVis (Short Papers), 2012)

Interactive Similarity Analysis and Error Detection in Large Tree Collections. - Jens Fangerau; Burkhard Höckendorf; Bastian Rieck; Christian Heine 002; Joachim Wittbrodt; Heike Leitte (Visualization in Medicine and Life Sciences III, 2016)

Gene-Level Representation Learning via Interventional Style Transfer in Optical Pooled Screening. - Mahtab Bigverdi; Burkhard Höckendorf; Heming Yao; Phil Hanslovsky; Romain Lopez; David Richmond (CVPR Workshops, 2024)

Weakly Supervised Set-Consistency Learning Improves Morphological Profiling of Single-Cell Images. - Heming Yao; Phil Hanslovsky; Jan-Christian Huetter; Burkhard Hoeckendorf; David Richmond (CVPR Workshops, 2024)

Supervised Contrastive Block Disentanglement. - Taro Makino; Ji Won Park; Natasa Tagasovska; Takamasa Kudo; Paula Coelho; Jan-Christian Huetter; Heming Yao; Burkhard Hoeckendorf; Ana Carolina Leote; Stephen Ra; David Richmond; Kyunghyun Cho; et al. (CoRR, 2025)