BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains. - Michael L. Blinov; James R. Faeder; Byron Goldstein; William S. Hlavacek (Bioinform., 2004)

Rule-based modeling of biochemical networks. - James R. Faeder; Michael L. Blinov; Byron Goldstein; William S. Hlavacek (Complex., 2005)

Diffusion Limited Reactions. - Byron Goldstein; Harold Levine; David Torney (SIAM J. Appl. Math., 2007)

Quantifying Intramolecular Binding in Multivalent Interactions: A Structure-Based Synergistic Study on Grb2-Sos1 Complex. - Anurag Sethi; Byron Goldstein; S. Gnanakaran (PLoS Comput. Biol., 2011)

Estimating the Probability of Polyreactive Antibodies 4E10 and 2F5 Disabling a gp41 Trimer after T Cell-HIV Adhesion. - Bin Hu 025; Hua-Xin Liao; S. Munir Alam; Byron Goldstein (PLoS Comput. Biol., 2014)