Persistent Chaos of Measles Epidemics in the Prevaccination United States Caused by a Small Change in Seasonal Transmission Patterns. - Benjamin D. Dalziel; Ottar N. Bjørnstad; Willem G. van Panhuis; Donald S. Burke; C. Jessica E. Metcalf; Bryan T. Grenfell (PLoS Comput. Biol., 2016)

A mechanistic spatio-temporal framework for modelling individual-to-individual transmission - With an application to the 2014-2015 West Africa Ebola outbreak. - Max S. Y. Lau; Gavin J. Gibson; Hola Adrakey; Amanda McClelland; Steven Riley; Jon Zelner; George Streftaris; Sebastian Funk; C. Jessica E. Metcalf; Benjamin D. Dalziel; Bryan T. Grenfell (PLoS Comput. Biol., 2017)

Optimal immune specificity at the intersection of host life history and parasite epidemiology. - Alexander E. Downie; Andreas Mayer; C. Jessica E. Metcalf; Andrea L. Graham (PLoS Comput. Biol., 2021)

Trip duration drives shift in travel network structure with implications for the predictability of spatial disease spread. - John R. Giles; Derek A. T. Cummings; Bryan T. Grenfell; Andrew J. Tatem; Elisabeth Zu Erbach-Schoenberg; C. Jessica E. Metcalf; Amy Wesolowski (PLoS Comput. Biol., 2021)

Comparing and linking machine learning and semi-mechanistic models for the predictability of endemic measles dynamics. - Max S. Y. Lau; Alexander D. Becker; Wyatt Madden; Lance A. Waller; C. Jessica E. Metcalf; Bryan T. Grenfell (PLoS Comput. Biol., 2022)

Infectious disease surveillance needs for the United States: lessons from COVID-19. - Marc Lipsitch; Mary T. Bassett; John S. Brownstein; Paul Elliott; David Eyre; M. Kate Grabowski; James A. Hay; Michael A. Johansson; Stephen M. Kissler; Daniel B. Larremore; Jennifer Layden; Justin Lessler; et al. (CoRR, 2023)

serosim: An R package for simulating serological data arising from vaccination, epidemiological and antibody kinetics processes. - Arthur Menezes; Saki Takahashi; Isobel Routledge; C. Jessica E. Metcalf; Andrea L. Graham; James A. Hay (PLoS Comput. Biol., 2023)

Impact of waning immunity against SARS-CoV-2 severity exacerbated by vaccine hesitancy. - Chadi M. Saad-Roy; Sinead E. Morris; Mike Boots; Rachel E. Baker; Bryan L. Lewis; Jeremy Farrar; Madhav V. Marathe; Andrea L. Graham; Simon A. Levin; Caroline E. Wagner; C. Jessica E. Metcalf; Bryan T. Grenfell (PLoS Comput. Biol., 2024)

RSero: A user-friendly R package to reconstruct pathogen circulation history from seroprevalence studies. - Nathanaël Hozé; Margarita Pons-Salort; C. Jessica E. Metcalf; Michael White; Henrik Salje; Simon Cauchemez (PLoS Comput. Biol., 2025)

Design of field trials for the evaluation of transmissible vaccines in animal populations. - Justin Sheen; Lee Kennedy-Shaffer; Michael Z. Levy; C. Jessica E. Metcalf (PLoS Comput. Biol., 2025)