Towards the Development of Computational Tools for Evaluating Phylogenetic Network Reconstruction Methods. - Luay Nakhleh; Jerry Sun 001; Tandy J. Warnow; C. Randal Linder; Bernard M. E. Moret; Anna Tholse (Pacific Symposium on Biocomputing, 2003)

Using MoBIoS' scalable genome join to find conserved primer pair candidates between two genomes. - Weijia Xu; Willard J. Briggs; Joanna Padolina; Ruth E. Timme; Wenguo Liu 003; C. Randal Linder; Daniel P. Miranker (ISMB/ECCB (Supplement of Bioinformatics), 2004)

Reconstructing reticulate evolution in species: theory and practice. - Luay Nakhleh; Tandy J. Warnow; C. Randal Linder (RECOMB, 2004)

Phylogenetic Networks: Modeling, Reconstructibility, and Accuracy. - Bernard M. E. Moret; Luay Nakhleh; Tandy J. Warnow; C. Randal Linder; Anna Tholse; Anneke Padolina; Jerry Sun 001; Ruth E. Timme (IEEE ACM Trans. Comput. Biol. Bioinform., 2004)

Reconstructing Reticulate Evolution in SpeciesTheory and Practice. - Luay Nakhleh; Tandy J. Warnow; C. Randal Linder; Katherine St. John (J. Comput. Biol., 2005)

Session Introduction. - Michael Brudno; Bernard M. E. Moret; C. Randal Linder; Tandy J. Warnow (Pacific Symposium on Biocomputing, 2008)

The Effect of the Guide Tree on Multiple Sequence Alignments and Subsequent Phylogenetic Analysis. - Serita M. Nelesen; Kevin Liu; D. Zhao; C. Randal Linder; Tandy J. Warnow (Pacific Symposium on Biocomputing, 2008)

Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment and Tree Accuracy. - Kevin Liu; Serita M. Nelesen; Sindhu Raghavan; C. Randal Linder; Tandy J. Warnow (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

A simulation study comparing supertree and combined analysis methods using SMIDGen. - M. Shel Swenson; François Barbançon; Tandy J. Warnow; C. Randal Linder (Algorithms Mol. Biol., 2010)

An experimental study of Quartets MaxCut and other supertree methods. - M. Shel Swenson; Rahul Suri; C. Randal Linder; Tandy J. Warnow (Algorithms Mol. Biol., 2011)

DACTAL: divide-and-conquer trees (almost) without alignments. - Serita M. Nelesen; Kevin Liu; Li-San Wang; C. Randal Linder; Tandy J. Warnow (Bioinform., 2012)