ESTScan: A Program for Detecting, Evaluating, and Reconstructing Potential Coding Regions in EST Sequences. - Christian Iseli; C. Victor Jongeneel; Philipp Bucher (ISMB, 1999)

Searching the Expressed Sequence Tag (EST) Databases: Panning for Genes. - C. Victor Jongeneel (Briefings Bioinform., 2000)

The need for a human gene index. - C. Victor Jongeneel (Bioinform., 2000)

Making Sense of Score Statistics for Sequence Alignments. - Marco Pagni; C. Victor Jongeneel (Briefings Bioinform., 2001)

trEST, trGEN and Hits: access to databases of predicted protein sequences. - Marco Pagni; Christian Iseli; Thomas Junier; Laurent Falquet; C. Victor Jongeneel; Philipp Bucher (Nucleic Acids Res., 2001)

Modeling sequencing errors by combining Hidden Markov models. - Claudio Lottaz; Christian Iseli; C. Victor Jongeneel; Philipp Bucher (ECCB, 2003)

Swiss EMBnet node web server. - Laurent Falquet; Lorenza Bordoli; Vassilios Ioannidis; Marco Pagni; C. Victor Jongeneel (Nucleic Acids Res., 2003)

MyHits: a new interactive resource for protein annotation and domain identification. - Marco Pagni; Vassilios Ioannidis; Lorenzo Cerutti; Monique Zahn-Zabal; C. Victor Jongeneel; Laurent Falquet (Nucleic Acids Res., 2004)

trome, trEST and trGEN: databases of predicted protein sequences. - Peter Sperisen; Christian Iseli; Marco Pagni; Brian J. Stevenson; Philipp Bucher; C. Victor Jongeneel (Nucleic Acids Res., 2004)

Rapid and selective surveillance of Arabidopsis thaliana genome annotations with Centrifuge. - Florence Armand; Philipp Bucher; C. Victor Jongeneel; Edward E. Farmer (Bioinform., 2005)

The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. - Sébastien Moretti; Fabrice Armougom; Iain M. Wallace; Desmond G. Higgins; C. Victor Jongeneel; Cédric Notredame (Nucleic Acids Res., 2007)

MyHits: improvements to an interactive resource for analyzing protein sequences. - Marco Pagni; Vassilios Ioannidis; Lorenzo Cerutti; Monique Zahn-Zabal; C. Victor Jongeneel; Jörg Hau; Olivier Martin 002; Dmitri Kuznetsov; Laurent Falquet (Nucleic Acids Res., 2007)

EuroDia: a beta-cell gene expression resource. - Robin Liechti; Gábor Csárdi; Sven Bergmann; Frédéric Schütz; Thierry Sengstag; Sylvia F. Boj; Joan-Marc Servitja; Jorge Ferrer; Leentje Van Lommel; Frans Schuit; Sonia Klinger; Bernard Thorens; et al. (Database J. Biol. Databases Curation, 2010)

KnowEnG: a knowledge engine for genomics. - Saurabh Sinha; Jun Song; Richard M. Weinshilboum; C. Victor Jongeneel; Jiawei Han 001 (J. Am. Medical Informatics Assoc., 2015)

Efficient and Scalable Workflows for Genomic Analyses. - Subho S. Banerjee; Arjun P. Athreya; Liudmila S. Mainzer; C. Victor Jongeneel; Wen-mei W. Hwu; Zbigniew T. Kalbarczyk; Ravishankar K. Iyer (DIDC@HPDC, 2016)

Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network. - C. Victor Jongeneel; Ovokeraye Achinike-Oduaran; Ezekiel F. Adebiyi; Marion O. Adebiyi; Seun Adeyemi; Bola Akanle; Shaun Aron; Efejiro Ashano; Hocine Bendou; Gerrit Botha; Emile R. Chimusa; Ananyo Choudhury; et al. (PLoS Comput. Biol., 2017)

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics. - Shakuntala Baichoo; Yassine Souilmi; Sumir Panji; Gerrit Botha; Ayton Meintjes; Scott Hazelhurst; Hocine Bendou; Eugene de Beste; Phelelani T. Mpangase; Oussema Souiai; Mustafa Alghali; Long Yi; et al. (BMC Bioinform., 2018)

Ten simple rules for developing bioinformatics capacity at an academic institution. - Shaun Aron; C. Victor Jongeneel; Paballo Abel Chauke; Melek Chaouch; Judit Kumuthini; Lyndon Zass; Fouzia Radouani; Samar Kamal Kassim; Faisal M. Fadlelmola; Nicola J. Mulder (PLoS Comput. Biol., 2021)