Efficient Cell Designs for Systolic Smith-Waterman Implementations. - Mustafa Gök; Çaglar Yilmaz (FPL, 2006)

Hardware Designs for Local Alignment of Protein Sequences. - Mustafa Gök; Çaglar Yilmaz (ISCIS, 2006)

An Optimized System for Multiple Sequence Alignment. - Çaglar Yilmaz; Mustafa Gök (ReConFig, 2009)