Identification of hierarchical chromatin domains. - Caleb Weinreb; Benjamin J. Raphael (Bioinform., 2016)

SPRING: a kinetic interface for visualizing high dimensional single-cell expression data. - Caleb Weinreb; Samuel L. Wolock; Allon M. Klein (Bioinform., 2018)

Distinguishing discrete and continuous behavioral variability using warped autoregressive HMMs. - Julia Costacurta; Lea Duncker; Blue Sheffer; Winthrop Gillis; Caleb Weinreb; Jeffrey E. Markowitz; Sandeep R. Datta; Alex H. Williams; Scott W. Linderman (NeurIPS, 2022)

Systems Neuro Browser (SNUB). - Caleb Weinreb; Mohammed Abdal Monium Osman; Maya Jay; Sandeep R. Datta (J. Open Source Softw., 2024)