Exploring 3D-QSAR pharmacophore mapping of azaphenanthrenone derivatives for mPGES-1 inhibition Using HypoGen technique. - Winston Yu-Chen Chen; Po-Yuan Chen; Calvin Yu-Chian Chen; Jing-Gung Chung (CIBCB, 2008)

Reducing without Side Effects? A Novel Strategy for Designing the PPAR Agonists. - Yea-Huey Chang; Da-Tian Bau; Ming-Hsui Tsai; Yuan-Man Hsu; Tin-Yun Ho; Chien-Yu Chen 002; Hung-Jin Huang; Fuu-Jen Tsai; Chang-Hai Tsai; Calvin Yu-Chian Chen (BMEI, 2009)

Could Traditional Chinese Medicine Used for Curing Erectile Dysfunction? - Chien-Yu Chen 002; Da-Tian Bau; Ming-Hsui Tsai; Yuan-Man Hsu; Tin-Yun Ho; Hung-Jin Huang; Yea-Huey Chang; Fuu-Jen Tsai; Chang-Hai Tsai; Calvin Yu-Chian Chen (BMEI, 2009)

Drug Design for AMP-Activated Protein Kinase Agonists in Silico. - Chien-Yu Chen 002; Da-Tian Bau; Ming-Hsui Tsai; Yuan-Man Hsu; Tin-Yun Ho; Hung-Jin Huang; Yea-Huey Chang; Fuu-Jen Tsai; Chang-Hai Tsai; Calvin Yu-Chian Chen (BMEI, 2009)

Drug Design for KU86 in DNA Break Repair System. - Chien-Yu Chen 002; Da-Tian Bau; Ming-Hsui Tsai; Yuan-Man Hsu; Tin-Yun Ho; Hung-Jin Huang; Yea-Huey Chang; Fuu-Jen Tsai; Chang-Hai Tsai; Calvin Yu-Chian Chen (BMEI, 2009)

Drug Design for the Influenza A Virus Subtype H1N1. - Chien-Yu Chen 002; Da-Tian Bau; Ming-Hsui Tsai; Yuan-Man Hsu; Tin-Yun Ho; Hung-Jin Huang; Yea-Huey Chang; Fuu-Jen Tsai; Chang-Hai Tsai; Calvin Yu-Chian Chen (BMEI, 2009)

Is that Possible to Design the Versatile Inhibitors for H1N1, H5N1, H5N2, and H5N7? - Chien-Yu Chen 002; Da-Tian Bau; Ming-Hsui Tsai; Yuan-Man Hsu; Tin-Yun Ho; Hung-Jin Huang; Yea-Huey Chang; Fuu-Jen Tsai; Chang-Hai Tsai; Calvin Yu-Chian Chen (BMEI, 2009)

A Novel Strategy for Designing Dual-Target Inhibitors of KU86 and XRCC4. - Chien-Yu Chen 002; Fuu-Jen Tsai; Jing-Gung Chung; Chang-Hai Tsai; Yuan-Man Hsu; Hung-Jin Huang; Tin-Yun Ho; Yea-Huey Chang; Da-Tian Bau; Ming-Hsui Tsai; Calvin Yu-Chian Chen (BMEI, 2009)

Dual-Targeted Drug Design of HER2 and HSP90 by CoMFA Model and Pharmacophore Analysis. - Hung-Jin Huang; Da-Tian Bau; Ming-Hsui Tsai; Yuan-Man Hsu; Tin-Yun Ho; Chien-Yu Chen 002; Yea-Huey Chang; Fuu-Jen Tsai; Chang-Hai Tsai; Calvin Yu-Chian Chen (BMEI, 2009)

Drug Design for XRCC4 in Silico. - Hung-Jin Huang; Fuu-Jen Tsai; Jing-Gung Chung; Chang-Hai Tsai; Yuan-Man Hsu; Tin-Yun Ho; Yea-Huey Chang; Da-Tian Bau; Ming-Hsui Tsai; Calvin Yu-Chian Chen (BMEI, 2009)

iScreen: world's first cloud-computing web server for virtual screening and de novo drug design based on TCM database@Taiwan. - Tsung-Ying Tsai; Kai-Wei Chang; Calvin Yu-Chian Chen (J. Comput. Aided Mol. Des., 2011)

Two Birds with One Stone? Possible Dual-Targeting H1N1 Inhibitors from Traditional Chinese Medicine. - Su-Sen Chang; Hung-Jin Huang; Calvin Yu-Chian Chen (PLoS Comput. Biol., 2011)

Identification of Potent EGFR Inhibitors from TCM Database@Taiwan. - Shun-Chieh Yang; Su-Sen Chang; Hsin-Yi Chen; Calvin Yu-Chian Chen (PLoS Comput. Biol., 2011)

Network pharmacology-based approach of novel traditional Chinese medicine formula for treatment of acute skin inflammation in silico. - Hsin-Chieh Tang; Hung-Jin Huang; Cheng-Chun Lee; Calvin Yu-Chian Chen (Comput. Biol. Chem., 2017)

Deep Learning and Random Forest Approach for Finding the Optimal Traditional Chinese Medicine Formula for Treatment of Alzheimer's Disease. - Hsin-Yi Chen; Jian-Qiang Chen; Jun-Yan Li; Hung-Jin Huang; Xi Chen; Hao-Ying Zhang; Calvin Yu-Chian Chen (J. Chem. Inf. Model., 2019)

Artificial Intelligence-Based Application to Explore Inhibitors of Neurodegenerative Diseases. - Leping Deng; Weihe Zhong; Lu Zhao; Xuedong He; Zongkai Lian; Shancheng Jiang; Calvin Yu-Chian Chen (Frontiers Neurorobotics, 2020)

Mol2Context-vec: learning molecular representation from context awareness for drug discovery. - Qiujie Lv; Guanxing Chen; Lu Zhao; Weihe Zhong; Calvin Yu-Chian Chen (Briefings Bioinform., 2021)

Clinical Named Entity Recognition using Contextualized Token Representations. - Yichao Zhou 001; Chelsea Ju; J. Harry Caufield; Kevin Shih; Calvin Yu-Chian Chen; Yizhou Sun; Kai-Wei Chang; Peipei Ping; Wei Wang 010 (CoRR, 2021)

Cascading residual-residual attention generative adversarial network for image super resolution. - Jianqiang Chen; Yali Zhang; Xiang Hu; Calvin Yu-Chian Chen (Soft Comput., 2021)

Lung Lesion Localization of COVID-19 From Chest CT Image: A Novel Weakly Supervised Learning Method. - Ziduo Yang; Lu Zhao; Shuyu Wu; Calvin Yu-Chian Chen (IEEE J. Biomed. Health Informatics, 2021)

3DGT-DDI: 3D graph and text based neural network for drug-drug interaction prediction. - Haohuai He; Guanxing Chen; Calvin Yu-Chian Chen (Briefings Bioinform., 2022)

FusionDTA: attention-based feature polymerizer and knowledge distillation for drug-target binding affinity prediction. - Weining Yuan; Guanxing Chen; Calvin Yu-Chian Chen (Briefings Bioinform., 2022)

Learning object-uncertainty policy for visual tracking. - Xuedong He; Calvin Yu-Chian Chen (Inf. Sci., 2022)

VAERHNN: Voting-averaged ensemble regression and hybrid neural network to investigate potent leads against colorectal cancer. - Guanxing Chen; Xuefei Jiang; Qiujie Lv; Xiaojun Tan; Zihuan Yang; Calvin Yu-Chian Chen (Knowl. Based Syst., 2022)

Exploring reliable visual tracking via target embedding network. - Xuedong He; Calvin Yu-Chian Chen (Knowl. Based Syst., 2022)

Dynamic concept-aware network for few-shot learning. - Jun Zhou; Qiujie Lv; Calvin Yu-Chian Chen (Knowl. Based Syst., 2022)

Capsule-Encoder-Decoder: A Method for Generalizable Building Extraction from Remote Sensing Images. - Zhenchao Tang; Calvin Yu-Chian Chen; Chengzhen Jiang; Dongying Zhang; Weiran Luo; Zhiming Hong; Huaiwei Sun (Remote. Sens., 2022)

Weakly Supervised Posture Mining for Fine-Grained Classification. - Zhenchao Tang; Hualin Yang; Calvin Yu-Chian Chen (CVPR, 2023)

DEGAT: A Graph Neural Network Algorithm Based on Dynamic Attention Mechanism for Molecular Property Prediction. - Wei Zeng; Mengtang Li; Calvin Yu-Chian Chen (ICBET, 2023)

Lightweight equivariant interaction graph neural network for accurate and efficient interatomic potential and force predictions. - Ziduo Yang; Xian Wang; Yifan Li; Qiujie Lv; Calvin Yu-Chian Chen; Lei Shen (CoRR, 2023)

Multimodal Identification of Alzheimer's Disease: A Review. - Guian Fang; Mengsha Liu; Yi Zhong; Zhuolin Zhang; Jiehui Huang; Zhenchao Tang; Calvin Yu-Chian Chen (CoRR, 2023)

Variable scale learning for visual object tracking. - Xuedong He; Lu Zhao; Calvin Yu-Chian Chen (J. Ambient Intell. Humaniz. Comput., 2023)

Enhancing discriminative appearance model for visual tracking. - Xuedong He; Calvin Yu-Chian Chen (Expert Syst. Appl., 2023)

3D graph neural network with few-shot learning for predicting drug-drug interactions in scaffold-based cold start scenario. - Qiujie Lv; Jun Zhou; Ziduo Yang; Haohuai He; Calvin Yu-Chian Chen (Neural Networks, 2023)

Attention fusion and target-uncertain detection for discriminative tracking. - Xuedong He; Calvin Yu-Chian Chen (Knowl. Based Syst., 2023)

Comprehensive View Embedding Learning for Single-Cell Multimodal Integration. - Zhenchao Tang; Jiehui Huang; Guanxing Chen; Calvin Yu-Chian Chen (AAAI, 2024)

Integrating sequence and graph information for enhanced drug-target affinity prediction. - Haohuai He; Guanxing Chen; Calvin Yu-Chian Chen (Sci. China Inf. Sci., 2024)

ProLLaMA: A Protein Large Language Model for Multi-Task Protein Language Processing. - Liuzhenghao Lv; Zongying Lin; Hao Li 073; Yuyang Liu; Jiaxi Cui; Calvin Yu-Chian Chen; Li Yuan 007; Yonghong Tian 001 (CoRR, 2024)

A knowledge distillation-guided equivariant graph neural network for improving protein interaction site prediction performance. - Shouzhi Chen; Zhenchao Tang; Linlin You; Calvin Yu-Chian Chen (Knowl. Based Syst., 2024)

TMBL: Transformer-based multimodal binding learning model for multimodal sentiment analysis. - Jiehui Huang; Jun Zhou; Zhenchao Tang; Jiaying Lin; Calvin Yu-Chian Chen (Knowl. Based Syst., 2024)

LDCNet: Lightweight dynamic convolution network for laparoscopic procedures image segmentation. - Yiyang Yin; Shuangling Luo; Jun Zhou; Liang Kang; Calvin Yu-Chian Chen (Neural Networks, 2024)

Multi-perspective neural network for dual drug repurposing in Alzheimer's disease. - Lu Zhao; Zhuojian Li; Guanxing Chen; Yiyang Yin; Calvin Yu-Chian Chen (Knowl. Based Syst., 2024)

GINCM-DTA: A graph isomorphic network with protein contact map representation for potential use against COVID-19 and Omicron subvariants BQ.1, BQ.1.1, XBB.1.5, XBB.1.16. - Guanxing Chen; Haohuai He; Lu Zhao; Qiujie Lv; Calvin Yu-Chian Chen (Expert Syst. Appl., 2024)

Progressive network based on detail scaling and texture extraction: A more general framework for image deraining. - Jiehui Huang; Zhenchao Tang; Xuedong He; Jun Zhou; Defeng Zhou; Calvin Yu-Chian Chen (Neurocomputing, 2024)

MFAE: Multilevel Feature Aggregation Enhanced Drug-Target Affinity Prediction for Drug Repurposing Against Colorectal Cancer. - Guanxing Chen; Haohuai He; Calvin Yu-Chian Chen (Adv. Intell. Syst., 2024)

Parkinson's severity diagnosis explainable model based on 3D multi-head attention residual network. - Jiehui Huang; Lishan Lin; Fengcheng Yu; Xuedong He; Wenhui Song; Jiaying Lin; Zhenchao Tang; Kang Yuan; Yucheng Li; Haofan Huang; Zhong Pei; Wenbiao Xian; et al. (Comput. Biol. Medicine, 2024)

Meta Learning With Graph Attention Networks for Low-Data Drug Discovery. - Qiujie Lv; Guanxing Chen; Ziduo Yang; Weihe Zhong; Calvin Yu-Chian Chen (IEEE Trans. Neural Networks Learn. Syst., 2024)

DSIL-DDI: A Domain-Invariant Substructure Interaction Learning for Generalizable Drug-Drug Interaction Prediction. - Zhenchao Tang; Guanxing Chen; Hualin Yang; Weihe Zhong; Calvin Yu-Chian Chen (IEEE Trans. Neural Networks Learn. Syst., 2024)

Interaction-Based Inductive Bias in Graph Neural Networks: Enhancing Protein-Ligand Binding Affinity Predictions From 3D Structures. - Ziduo Yang; Weihe Zhong; Qiujie Lv; Tiejun Dong; Guanxing Chen; Calvin Yu-Chian Chen (IEEE Trans. Pattern Anal. Mach. Intell., 2024)

TaxDiff: taxonomic-guided diffusion model for protein sequence generation. - Zongying Lin; Hao Li 073; Liuzhenghao Lv; Yu Wang; Bin Lin 014; Junwu Zhang; Zijun Chen; Calvin Yu-Chian Chen; Li Yuan 007; Yonghong Tian 001 (Sci. China Inf. Sci., 2025)

Dual modality feature fused neural network integrating binding site information for drug target affinity prediction. - Haohuai He; Guanxing Chen; Zhenchao Tang; Calvin Yu-Chian Chen (npj Digit. Medicine, 2025)

A Novel End-to-End 3-D Residual and Attention Enhancement Joint Few-Shot Learning Model for Huntington Clinical Assessment. - Jiehui Huang; Lishan Lin; Jiaying Lin; Jun Zhou; Baiqiao Yin; Weichen Lyu; Fengjuan Su; Kang Yuan; Mansi Cai; Yucheng Li; Haifan Kong; Jean-Marc Burgunder; et al. (IEEE Trans. Instrum. Meas., 2025)

Meta-MolNet: A Cross-Domain Benchmark for Few Examples Drug Discovery. - Qiujie Lv; Guanxing Chen; Ziduo Yang; Weihe Zhong; Calvin Yu-Chian Chen (IEEE Trans. Neural Networks Learn. Syst., 2025)

Modal-NexT: Towards unified heterogeneous cellular data integration. - Zhenchao Tang; Guanxing Chen; Shouzhi Chen; Haohuai He; Jiehui Huang; Tiejun Dong; Jun Zhou; Lu Zhao; Linlin You; Calvin Yu-Chian Chen (Inf. Fusion, 2026)