Navigating in a Sea of Repeats in RNA-seq without Drowning. - Gustavo Sacomoto; Blerina Sinaimeri; Camille Marchet; Vincent Miele; Marie-France Sagot; Vincent Lacroix (WABI, 2014)

A Resource-frugal Probabilistic Dictionary and Applications in (Meta)Genomics. - Camille Marchet; Antoine Limasset; Lucie Bittner; Pierre Peterlongo (Stringology, 2016)

Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads. - Leandro Lima; Blerina Sinaimeri; Gustavo Sacomoto; Hélène Lopez-Maestre; Camille Marchet; Vincent Miele; Marie-France Sagot; Vincent Lacroix (Algorithms Mol. Biol., 2017)

From reads to transcripts: de novo methods for the analysis of transcriptome second and third generation sequencing. (Des lectures aux transcrits: méthodes de novo pour l'analyse du séquençage des transcriptomes de deuxième et troisième génération). - Camille Marchet (2018)

Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data. - Leandro Lima; Camille Marchet; Ségolène Caboche; Corinne Da Silva; Benjamin Istace; Jean-Marc Aury; Hélène Touzet; Rayan Chikhi (Briefings Bioinform., 2020)

REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets. - Camille Marchet; Zamin Iqbal; Daniel Gautheret; Mikaël Salson; Rayan Chikhi (Bioinform., 2020)

A resource-frugal probabilistic dictionary and applications in bioinformatics. - Camille Marchet; Lolita Lecompte; Antoine Limasset; Lucie Bittner; Pierre Peterlongo (Discret. Appl. Math., 2020)

BLight: efficient exact associative structure for k-mers. - Camille Marchet; Maël Kerbiriou; Antoine Limasset (Bioinform., 2021)

Fractional Hitting Sets for Efficient and Lightweight Genomic Data Sketching. - Timothé Rouzé; Igor Martayan; Camille Marchet; Antoine Limasset (WABI, 2023)

Scalable sequence database search using partitioned aggregated Bloom comb trees. - Camille Marchet; Antoine Limasset (Bioinform., 2023)

Cdbgtricks: Strategies to update a compacted de Bruijn graph. - Khodor Hannoush; Camille Marchet; Pierre Peterlongo (PSC, 2024)

Conway-Bromage-Lyndon (CBL): an exact, dynamic representation of k-mer sets. - Igor Martayan; Bastien Cazaux; Antoine Limasset; Camille Marchet (Bioinform., 2024)

On the number of k-mers admitting a given lexicographical minimizer. - Florian Ingels; Camille Marchet; Mikaël Salson (CoRR, 2024)

KaMRaT: a C++ toolkit for k-mer count matrix dimension reduction. - Haoliang Xue; Mélina Gallopin; Camille Marchet; Ha N. Nguyen; Yunfeng Wang; Antoine Lainé; Chloé Bessiere; Daniel Gautheret (Bioinform., 2024)

Fractional hitting sets for efficient multiset sketching. - Timothé Rouzé; Igor Martayan; Camille Marchet; Antoine Limasset (Algorithms Mol. Biol., 2025)