CelloS: A Multi-level Approach to Evolutionary Dynamics. - Camille Stephan-Otto Attolini; Peter F. Stadler; Christoph Flamm (ECAL, 2005)

Neutral Networks of Interacting RNA Secondary Structures. - Camille Stephan-Otto Attolini; Peter F. Stadler (Adv. Complex Syst., 2005)

A Differentiation-Based Phylogeny of Cancer Subtypes. - Markus Riester; Camille Stephan-Otto Attolini; Robert J. Downey; Samuel Singer; Franziska Michor (PLoS Comput. Biol., 2010)

htSeqTools: high-throughput sequencing quality control, processing and visualization in R. - Evarist Planet; Camille Stephan-Otto Attolini; Oscar Reina; Oscar Flores; David Rossell (Bioinform., 2012)

Designing alternative splicing RNA-seq studies. Beyond generic guidelines. - Camille Stephan-Otto Attolini; Víctor Peña; David Rossell (Bioinform., 2015)

12 Grand Challenges in Single-Cell Data Science. - David Laehnemann; Johannes Köster; Ewa Szczurek; Davis J. McCarthy; Stephanie C. Hicks; Mark D. Robinson; Catalina A. Vallejos; Niko Beerenwinkel; Kieran R. Campbell; Ahmed Mahfouz; Luca Pinello; Pavel Skums; et al. (PeerJ Prepr., 2019)

Roastgsa: a comparison of rotation-based scores for gene set enrichment analysis. - Adrià Caballé-Mestres; Antoni Berenguer-Llergo; Camille Stephan-Otto Attolini (BMC Bioinform., 2023)