English Querying over Ontologies: E-QuOnto. - Raffaella Bernardi; Francesca Bonin; Diego Calvanese; Domenico Carbotta; Camilo Thorne (AI*IA, 2007)

Expressing DL-Lite Ontologies with Controlled English. - Raffaella Bernardi; Diego Calvanese; Camilo Thorne (Description Logics, 2007)

Categorial Module Grammars of Bounded Size have Finite Bounded Density. - Camilo Thorne (LATA, 2007)

Aggregate queries over ontologies. - Diego Calvanese; Evgeny Kharlamov; Werner Nutt; Camilo Thorne (ONISW, 2008)

The Data Complexity of the Syllogistic Fragments of English. - Camilo Thorne; Diego Calvanese (Amsterdam Colloquium on Logic, Language and Meaning, 2009)

Controlled English Ontology-Based Data Access. - Camilo Thorne; Diego Calvanese (CNL, 2009)

Exploring Controlled English Ontology-Based Data Access. - Camilo Thorne; Diego Calvanese (CNL (Pre-Proceedings), 2009)

Controlled Aggregate Tree Shaped Questions over Ontologies. - Camilo Thorne; Diego Calvanese (FQAS, 2009)

Querying the Fragments of English. - Camilo Thorne (WoLLIC, 2011)

Tractability and Intractability of Controlled Languages for Data Access. - Camilo Thorne; Diego Calvanese (Stud Logica, 2012)

Process Fragment Recognition in Clinical Documents. - Camilo Thorne; Elena Cardillo; Claudio Eccher; Marco Montali; Diego Calvanese (AI*IA, 2013)

Automated Activity Recognition in Clinical Documents. - Camilo Thorne; Marco Montali; Diego Calvanese; Elena Cardillo; Claudio Eccher (IJCNLP, 2013)

Chases and Bag-Set Certain Answers. - Camilo Thorne (CoRR, 2014)

The Expressive Power of DL-Lite. - Camilo Thorne (CoRR, 2014)

Towards Decision Making via Expressive Probabilistic Ontologies. - Erman Acar; Camilo Thorne; Heiner Stuckenschmidt (ADT, 2015)

Semantic Complexity of Quantifiers and Their Distribution in Corpora. - Jakub Szymanik; Camilo Thorne (IWCS, 2015)

Spanish NER with Word Representations and Conditional Random Fields. - Jenny Copara; José Ochoa; Camilo Thorne; Goran Glavas (NEWS@ACM, 2016)

Exploring Unsupervised Features in Conditional Random Fields for Spanish Named Entity Recognition. - Jenny Copara; José Ochoa; Camilo Thorne; Goran Glavas (BRACIS, 2016)

Cross-Evaluation of Entity Linking and Disambiguation Systems for Clinical Text Annotation. - Camilo Thorne; Stefano Faralli 001; Heiner Stuckenschmidt (SEMANTiCS, 2016)

Conditional Random Fields for Spanish Named Entity Recognition Using Unsupervised Features. - Jenny Copara; José Ochoa; Camilo Thorne; Goran Glavas (IBERAMIA, 2016)

Towards Confidence Estimation for Typed Protein-Protein Relation Extraction. - Camilo Thorne; Roman Klinger (BiomedicalNLP@RANLP, 2017)

Multi-Attribute Decision Making with Weighted Description Logics. - Erman Acar; Manuel Fink; Christian Meilicke; Camilo Thorne; Heiner Stuckenschmidt (FLAP, 2017)

Chatbots for troubleshooting: A survey. - Camilo Thorne (Lang. Linguistics Compass, 2017)

On the Semantic Similarity of Disease Mentions in MEDLINE and Twitter. - Camilo Thorne; Roman Klinger (NLDB, 2018)

Detecting Chemical Reactions in Patents. - Hiyori Yoshikawa; Dat Quoc Nguyen; Zenan Zhai; Christian Druckenbrodt; Camilo Thorne; Saber A. Akhondi; Timothy Baldwin; Karin Verspoor (ALTA, 2019)

Improving Chemical Named Entity Recognition in Patents with Contextualized Word Embeddings. - Zenan Zhai; Dat Quoc Nguyen; Saber A. Akhondi; Camilo Thorne; Christian Druckenbrodt; Trevor Cohn; Michelle Gregory; Karin Verspoor (BioNLP@ACL, 2019)

Overview of ChEMU 2020: Named Entity Recognition and Event Extraction of Chemical Reactions from Patents. - Jiayuan He 002; Dat Quoc Nguyen; Saber A. Akhondi; Christian Druckenbrodt; Camilo Thorne; Ralph Hoessel; Zubair Afzal; Zenan Zhai; Biaoyan Fang; Hiyori Yoshikawa; Ameer Albahem; Lawrence Cavedon; et al. (CLEF, 2020)

An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. - Jiayuan He 002; Dat Quoc Nguyen; Saber A. Akhondi; Christian Druckenbrodt; Camilo Thorne; Ralph Hoessel; Zubair Afzal; Zenan Zhai; Biaoyan Fang; Hiyori Yoshikawa; Ameer Albahem; Jingqi Wang; et al. (CLEF (Working Notes), 2020)

ChEMU: Named Entity Recognition and Event Extraction of Chemical Reactions from Patents. - Dat Quoc Nguyen; Zenan Zhai; Hiyori Yoshikawa; Biaoyan Fang; Christian Druckenbrodt; Camilo Thorne; Ralph Hoessel; Saber A. Akhondi; Trevor Cohn; Timothy Baldwin; Karin Verspoor (ECIR (2), 2020)

Disease Normalization with Graph Embeddings. - Dhruba Pujary; Camilo Thorne; Wilker Aziz (IntelliSys (2), 2020)

Word Embeddings for Chemical Patent Natural Language Processing. - Camilo Thorne; Saber A. Akhondi (CoRR, 2020)

Stress Test Evaluation of Biomedical Word Embeddings. - Vladimir Araujo; Andrés Carvallo; Carlos Aspillaga; Camilo Thorne; Denis Parra (BioNLP@NAACL-HLT, 2021)

Extended Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. - Yuan Li 012; Biaoyan Fang; Jiayuan He 002; Hiyori Yoshikawa; Saber A. Akhondi; Christian Druckenbrodt; Camilo Thorne; Zubair Afzal; Zenan Zhai; Timothy Baldwin; Karin Verspoor (CLEF (Working Notes), 2021)

Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. - Yuan Li 012; Biaoyan Fang; Jiayuan He 002; Hiyori Yoshikawa; Saber A. Akhondi; Christian Druckenbrodt; Camilo Thorne; Zubair Afzal; Zenan Zhai; Timothy Baldwin; Karin Verspoor (CLEF, 2021)

ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. - Jiayuan He 002; Biaoyan Fang; Hiyori Yoshikawa; Yuan Li 012; Saber A. Akhondi; Christian Druckenbrodt; Camilo Thorne; Zubair Afzal; Zenan Zhai; Lawrence Cavedon; Trevor Cohn; Timothy Baldwin; et al. (ECIR (2), 2021)

ChEMU 2020: Natural Language Processing Methods Are Effective for Information Extraction From Chemical Patents. - Jiayuan He 002; Dat Quoc Nguyen; Saber A. Akhondi; Christian Druckenbrodt; Camilo Thorne; Ralph Hoessel; Zubair Afzal; Zenan Zhai; Biaoyan Fang; Hiyori Yoshikawa; Ameer Albahem; Lawrence Cavedon; et al. (Frontiers Res. Metrics Anal., 2021)

ChemTables: a dataset for semantic classification on tables in chemical patents. - Zenan Zhai; Christian Druckenbrodt; Camilo Thorne; Saber A. Akhondi; Dat Quoc Nguyen; Trevor Cohn; Karin Verspoor (J. Cheminformatics, 2021)

Extended Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. - Yuan Li 012; Biaoyan Fang; Jiayuan He 002; Hiyori Yoshikawa; Saber A. Akhondi; Christian Druckenbrodt; Camilo Thorne; Zubair Afzal; Zenan Zhai; Kojiro Machi; Masaharu Yoshioka; Youngrok Jang; et al. (CLEF (Working Notes), 2022)

Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. - Yuan Li 012; Biaoyan Fang; Jiayuan He 002; Hiyori Yoshikawa; Saber A. Akhondi; Christian Druckenbrodt; Camilo Thorne; Zubair Afzal; Zenan Zhai; Timothy Baldwin; Karin Verspoor (CLEF, 2022)

The ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. - Yuan Li 012; Biaoyan Fang; Jiayuan He 002; Hiyori Yoshikawa; Saber A. Akhondi; Christian Druckenbrodt; Camilo Thorne; Zenan Zhai; Zubair Afzal; Trevor Cohn; Timothy Baldwin; Karin Verspoor (ECIR (2), 2022)

Stress Testing BERT Anaphora Resolution Models for Reaction Extraction in Chemical Patents. - Chieling Yueh; Evangelos Kanoulas; Bruno Martins; Camilo Thorne; Saber A. Akhondi (CoRR, 2023)

One Strike, You're Out: Detecting Markush Structures in Low Signal-to-Noise Ratio Images. - Thomas Jurriaans; Kinga Szarkowska; Eric T. Nalisnick; Markus Schwörer; Camilo Thorne; Saber A. Akhondi (CoRR, 2023)

Learning Section Weights for Multi-label Document Classification. - Maziar Moradi Fard; Paula Sorrolla Bayod; Kiomars Motarjem; Mohammad Alian Nejadi; Saber A. Akhondi; Camilo Thorne (NLDB (2), 2024)

Automated Synonym Discovery for Taxonomy Maintenance Using Semantic Search Techniques. - Maziar Moradi Fard; Camilo Thorne; Paula Sorrolla Bayod; Saber A. Akhondi; Wytze Vlietstra (NLDB (2), 2024)

Focused Contrastive Loss for Classification With Pre-Trained Language Models. - Jiayuan He 002; Yuan Li 012; Zenan Zhai; Biaoyan Fang; Camilo Thorne; Christian Druckenbrodt; Saber A. Akhondi; Karin Verspoor (IEEE Trans. Knowl. Data Eng., 2024)