Babelomics 5.0: functional interpretation for new generations of genomic data. - Roberto Alonso; Francisco Salavert; Francisco García-García 002; José Carbonell-Caballero; Marta Bleda; Luz Garcia-Alonso; Alba Sanchis-Juan; Daniel Perez-Gil; Pablo Marín-García; Rubén Sánchez 002; Cankut Çubuk; Marta R. Hidalgo; et al. (Nucleic Acids Res., 2015)

Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models. - Francisco Salavert; Marta R. Hidalgo; Alicia Amadoz; Cankut Çubuk; Ignacio Medina; Daniel Crespo; José Carbonell-Caballero; Joaquín Dopazo (Nucleic Acids Res., 2016)

Reference genome assessment from a population scale perspective: an accurate profile of variability and noise. - José Carbonell-Caballero; Alicia Amadoz; Roberto Alonso; Marta R. Hidalgo; Cankut Çubuk; David V. Conesa; Antonio López-Quílez; Joaquín Dopazo (Bioinform., 2017)

A comparison of mechanistic signaling pathway activity analysis methods. - Alicia Amadoz; Marta R. Hidalgo; Cankut Çubuk; José Carbonell-Caballero; Joaquín Dopazo (Briefings Bioinform., 2019)

Mechanistic modeling of the SARS-CoV-2 disease map. - Kinza Rian; Marina Esteban-Medina; Marta R. Hidalgo; Cankut Çubuk; Matias M. Falco; Carlos Loucera; Devrim Gunyel; Marek Ostaszewski; María Peña-Chilet; Joaquín Dopazo (BioData Min., 2021)