On the repetitive collection indexing problem. - Ali Alatabbi; Carl Barton; Costas S. Iliopoulos (BIBM Workshops, 2012)

Querying Highly Similar Structured Sequences via Binary Encoding and Word Level Operations. - Ali Alatabbi; Carl Barton; Costas S. Iliopoulos; Laurent Mouchard (AIAI (2), 2012)

Melodic String Matching via Interval Consolidation and Fragmentation. - Carl Barton; Emilios Cambouropoulos; Costas S. Iliopoulos; Zsuzsanna Lipták (AIAI (2), 2012)

Conceptualization and Significance Study of a New Appliation CS-MIR. - Kaichun K. Chang; Carl Barton; Costas S. Iliopoulos; Jyh-Shing Roger Jang (AIAI (1), 2012)

GapsMis: flexible sequence alignment with a bounded number of gaps. - Carl Barton; Tomás Flouri; Costas S. Iliopoulos; Solon P. Pissis (BCB, 2013)

Identification of All Exact and Approximate Inverted Repeats in Regular and Weighted Sequences. - Carl Barton; Costas S. Iliopoulos; Nicola J. Mulder; Bruce W. Watson (EANN (2), 2013)

Querying highly similar sequences. - Carl Barton; Mathieu Giraud; Costas S. Iliopoulos; Thierry Lecroq; Laurent Mouchard; Solon P. Pissis (Int. J. Comput. Biol. Drug Des., 2013)

Optimal Computation of all Repetitions in a Weighted String. - Carl Barton; Solon P. Pissis (ICABD, 2014)

Fast and Simple Computations Using Prefix Tables Under Hamming and Edit Distance. - Carl Barton; Costas S. Iliopoulos; Solon P. Pissis; William F. Smyth (IWOCA, 2014)

Fast algorithms for approximate circular string matching. - Carl Barton; Costas S. Iliopoulos; Solon P. Pissis (Algorithms Mol. Biol., 2014)

Optimal computation of all tandem repeats in a weighted sequence. - Carl Barton; Costas S. Iliopoulos; Solon P. Pissis (Algorithms Mol. Biol., 2014)

Linear-time computation of minimal absent words using suffix array. - Carl Barton; Alice Héliou; Laurent Mouchard; Solon P. Pissis (BMC Bioinform., 2014)

On the Average-case Complexity of Pattern Matching with Wildcards. - Carl Barton; Costas S. Iliopoulos (CoRR, 2014)

Extending alignments with k-mismatches and ℓ-gaps. - Carl Barton; Costas S. Iliopoulos; Inbok Lee; Laurent Mouchard; Kunsoo Park; Solon P. Pissis (Theor. Comput. Sci., 2014)

Linear-Time Computation of Prefix Table for Weighted Strings. - Carl Barton; Solon P. Pissis (WORDS, 2015)

Average-Case Optimal Approximate Circular String Matching. - Carl Barton; Costas S. Iliopoulos; Solon P. Pissis (LATA, 2015)

Parallelising the Computation of Minimal Absent Words. - Carl Barton; Alice Héliou; Laurent Mouchard; Solon P. Pissis (PPAM (2), 2015)

Accurate and Efficient Methods to Improve Multiple Circular Sequence Alignment. - Carl Barton; Costas S. Iliopoulos; Ritu Kundu; Solon P. Pissis; Ahmad Retha; Fatima Vayani (SEA, 2015)

Global and local sequence alignment with a bounded number of gaps. - Carl Barton; Tomás Flouri; Costas S. Iliopoulos; Solon P. Pissis (Theor. Comput. Sci., 2015)

On-Line Pattern Matching on Uncertain Sequences and Applications. - Carl Barton; Chang Liu 035; Solon P. Pissis (COCOA, 2016)

Efficient Index for Weighted Sequences. - Carl Barton; Tomasz Kociumaka; Solon P. Pissis; Jakub Radoszewski (CPM, 2016)

Linear-time computation of prefix table for weighted strings & applications. - Carl Barton; Chang Liu 035; Solon P. Pissis (Theor. Comput. Sci., 2016)

Fast circular dictionary-matching algorithm. - Tanver Athar; Carl Barton; Widmer Bland; Jia Gao 001; Costas S. Iliopoulos; Chang Liu 035; Solon P. Pissis (Math. Struct. Comput. Sci., 2017)

A faster and more accurate heuristic for cyclic edit distance computation. - Lorraine A. K. Ayad; Carl Barton; Solon P. Pissis (Pattern Recognit. Lett., 2017)

Longest Common Prefixes with k-Errors and Applications. - Lorraine A. K. Ayad; Carl Barton; Panagiotis Charalampopoulos; Costas S. Iliopoulos; Solon P. Pissis (SPIRE, 2018)

Crochemore's Partitioning on Weighted Strings and Applications. - Carl Barton; Solon P. Pissis (Algorithmica, 2018)

Fast Average-Case Pattern Matching on Weighted Sequences. - Carl Barton; Chang Liu 035; Solon P. Pissis (Int. J. Found. Comput. Sci., 2018)

ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy. - Carl Barton; Sandro Morganella; Øyvind Ødegård-Fougner; Stephanie Alexander; Jonas Ries; Tomas W. Fitzgerald; Jan Ellenberg; Ewan Birney (PLoS Comput. Biol., 2018)

Indexing weighted sequences: Neat and efficient. - Carl Barton; Tomasz Kociumaka; Chang Liu 035; Solon P. Pissis; Jakub Radoszewski (Inf. Comput., 2020)

On the average-case complexity of pattern matching with wildcards. - Carl Barton (Theor. Comput. Sci., 2022)

A novel hierarchy-based knowledge discovery framework for elucidating human aging-related phenotypic abnormalities. - Cen Wan; Carl Barton (SAC, 2024)

Unbiased and Error-Detecting Combinatorial Pooling Experiments with Balanced Constant-Weight Gray Codes for Consecutive Positives Detection. - Guanchen He; Vasilisa A. Kovaleva; Carl Barton; Paul G. Thomas; Mikhail V. Pogorelyy; Hannah V. Meyer; Qin Huang (CoRR, 2025)