A multi-agent system for automated genomic annotation. - Keith Decker; Xiaojing Zheng; Carl J. Schmidt (Agents, 2001)

Extending a Multi-agent System for Genomic Annotation. - Keith Decker; Salim Khan; Carl J. Schmidt; Dennis Michaud (CIA, 2001)

BioMAS: A Multi-Agent System for Genomic Annotation. - Keith Decker; Salim Khan; Carl J. Schmidt; Gang Situ; Ravi Makkena; Dennis Michaud (Int. J. Cooperative Inf. Syst., 2002)

A Multi-Agent System-driven AI Planning Approach to Biological Pathway Discovery. - Salim Khan; William Gillis; Carl J. Schmidt; Keith Decker (ICAPS, 2003)

A multi-agent system for the quantitative simulation of biological networks. - Salim Khan; Ravi Makkena; Foster McGeary; Keith S. Decker; William Gillis; Carl J. Schmidt (AAMAS, 2003)

GoFigure: Automated Gene OntologyTM annotation. - Salim Khan; Gang Situ; Keith Decker; Carl J. Schmidt (Bioinform., 2003)

Mining the Biomedical Literature for Genic Information. - Catalina O. Tudor; K. Vijay-Shanker; Carl J. Schmidt (BioNLP, 2008)

Gallus GBrowse: a unified genomic database for the chicken. - Carl J. Schmidt; Michael Romanov; Oliver Ryder; Vincent J. Magrini; Matthew T. Hickenbotham; Jarret Glasscock; Sean McGrath 003; Elaine R. Mardis; Lincoln D. Stein (Nucleic Acids Res., 2008)

BioPlanner: A Plan Adaptation Approach for the Discovery of Biological Pathways across Species. - Li Jin; Keith S. Decker; Carl J. Schmidt (IAAI, 2009)

eGIFT: Mining Gene Information from the Literature. - Catalina O. Tudor; Carl J. Schmidt; K. Vijay-Shanker (BMC Bioinform., 2010)

Using expression data to help pathway curation. - Keith Decker; Preeti Anday; Liang Sun; Carl J. Schmidt (BIBM Workshops, 2012)

Pathway curation: Application of text-mining tools eGIFT and RLIMS-P. - Carl J. Schmidt; Liang Sun; Cecilia N. Arighi; Keith Decker; K. Vijay-Shanker; Manabu Torii; Catalina O. Tudor; Cathy H. Wu; Peter D'Eustachio (BIBM Workshops, 2012)

Developing a biocuration workflow for AgBase, a non-model organism database. - Lakshmi R. Pillai; Philippe Chouvarine; Catalina O. Tudor; Carl J. Schmidt; K. Vijay-Shanker; Fiona M. McCarthy (Database J. Biol. Databases Curation, 2012)

PathRings: a web-based tool for exploration of ortholog and expression data in biological pathways. - Yongnan Zhu; Liang Sun; Alexander Garbarino; Carl J. Schmidt; Jinglong Fang; Jian Chen 006 (BMC Bioinform., 2015)

miRiaD: A Text Mining Tool for Detecting Associations of microRNAs with Diseases. - Samir Gupta; Karen E. Ross; Catalina O. Tudor; Cathy H. Wu; Carl J. Schmidt; K. Vijay-Shanker (J. Biomed. Semant., 2016)

WebGIVI: a web-based gene enrichment analysis and visualization tool. - Liang Sun; Yongnan Zhu; A. S. M. Ashique Mahmood; Catalina O. Tudor; Jia Ren; K. Vijay-Shanker; Jian Chen 006; Carl J. Schmidt (BMC Bioinform., 2017)

Graph query algebra and visual proximity rules for biological pathway exploration. - Keqin Wu; Liang Sun; Carl J. Schmidt; Jian Chen 006 (Inf. Vis., 2017)

TransAtlasDB: an integrated database connecting expression data, metadata and variants. - Modupeore O. Adetunji; Susan J. Lamont; Carl J. Schmidt (Database J. Biol. Databases Curation, 2018)