Tibanna: software for scalable execution of portable pipelines on the cloud. - Soohyun Lee; Jeremy Johnson; Carl Vitzthum; Koray Kirli; Burak Han Alver; Peter J. Park (Bioinform., 2019)

Pairs and Pairix: a file format and a tool for efficient storage and retrieval for Hi-C read pairs. - Soohyun Lee; Clara R. Bakker; Carl Vitzthum; Burak Han Alver; Peter J. Park (Bioinform., 2022)