Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes. - Mamunur Rashid; Carla Daniela Robles-Espinoza; Alistair G. Rust; David J. Adams (Bioinform., 2013)

RSAT 2018: regulatory sequence analysis tools 20th anniversary. - Nga Thi Thuy Nguyen; Bruno Contreras-Moreira; Jaime Abraham Castro-Mondragón; Walter Santana-Garcia; Raul Ossio; Carla Daniela Robles-Espinoza; Mathieu Bahin; Samuel Collombet; Pierre Vincens; Denis Thieffry; Jacques van Helden; Alejandra Medina-Rivera; et al. (Nucleic Acids Res., 2018)

VCF/Plotein: visualization and prioritization of genomic variants from human exome sequencing projects. - Raul Ossio; O. Isaac Garcia-Salinas; Diego Said Anaya-Mancilla; Jair S. García-Sotelo; Luis A. Aguilar; David J. Adams; Carla Daniela Robles-Espinoza (Bioinform., 2019)