An analysis of conformational changes upon RNA-protein binding. - Kannan Sankar; Rasna R. Walia; Carla M. Mann; Robert L. Jernigan; Vasant G. Honavar; Drena Dobbs (BCB, 2014)

A Motif-Based Method for Predicting Interfacial Residues in Both the RNA and Protein Components of Protein-RNA Complexes. - Usha Muppirala; Benjamin A. Lewis; Carla M. Mann; Drena Dobbs (PSB, 2016)

The Gene Sculpt Suite: a set of tools for genome editing. - Carla M. Mann; Gabriel Martínez-Gálvez; Jordan M. Welker; Wesley A. Wierson; Hirotaka Ata; Maira P. Almeida; Karl J. Clark; Jeffrey J. Essner; Maura McGrail; Stephen C. Ekker; Drena Dobbs (Nucleic Acids Res., 2019)

DeepSpeed4Science Initiative: Enabling Large-Scale Scientific Discovery through Sophisticated AI System Technologies. - Shuaiwen Leon Song; Bonnie Kruft; Minjia Zhang; Conglong Li; Shiyang Chen 004; Chengming Zhang 006; Masahiro Tanaka; Xiaoxia Wu; Jeff Rasley; Ammar Ahmad Awan; Connor Holmes; Martin Cai; et al. (CoRR, 2023)

GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics. - Maxim Zvyagin; Alexander Brace; Kyle Hippe; Yuntian Deng; Bin Zhang; Cindy Orozco Bohorquez; Austin Clyde; Bharat Kale; Danilo Perez-Rivera; Heng Ma; Carla M. Mann; Michael W. Irvin; et al. (Int. J. High Perform. Comput. Appl., 2023)

MProt-DPO: Breaking the ExaFLOPS Barrier for Multimodal Protein Design Workflows with Direct Preference Optimization. - Gautham Dharuman; Kyle Hippe; Alexander Brace; Sam Foreman; Väinö Hatanpää; Varuni Katti Sastry; Huihuo Zheng; Logan T. Ward; Servesh Muralidharan; Archit Vasan; Bharat Kale; Carla M. Mann; et al. (SC, 2024)