HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates 13C Isotopomer Data. - Carles Foguet; Silvia Marin; Vitaly A. Selivanov; Eric Fanchon; Wai-Nang Paul Lee; Joan J. Guinovart; Pedro de Atauri; Marta Cascante (PLoS Comput. Biol., 2016)

Interoperable and scalable data analysis with microservices: applications in metabolomics. - Payam Emami Khoonsari; Pablo A. Moreno; Sven Bergmann; Joachim Burman; Marco Capuccini; Matteo Carone; Marta Cascante; Pedro de Atauri; Carles Foguet; Alejandra N. González-Beltrán; Thomas Hankemeier; Kenneth Haug; et al. (Bioinform., 2019)

p13CMFA: Parsimonious 13C metabolic flux analysis. - Carles Foguet; Anusha Jayaraman; Silvia Marin; Vitaly A. Selivanov; Pablo A. Moreno; Ramon Messeguer; Pedro de Atauri; Marta Cascante (PLoS Comput. Biol., 2019)

Integrating systemic and molecular levels to infer key drivers sustaining metabolic adaptations. - Pedro de Atauri; Míriam Tarrado-Castellarnau; Josep Tarragó-Celada; Carles Foguet; Effrosyni Karakitsou; Josep J. Centelles; Marta Cascante (PLoS Comput. Biol., 2021)

Control analysis in the identification of key enzymes driving metabolic adaptations: Towards drug target discovery. - Pedro de Atauri; Carles Foguet; Marta Cascante (Biosyst., 2023)