affy2svaffy2sv: an R package to pre-process Affymetrix CytoScan HD and 750K arrays for SNP, CNV, inversion and mosaicism calling. - Carles Hernandez-Ferrer; Ines Quintela Garcia; Katharina Danielski; Ángel Carracedo; Luis A. Pérez-Jurado; Juan R. González (BMC Bioinform., 2015)

psygenet2r: a R/Bioconductor package for the analysis of psychiatric disease genes. - Alba Gutiérrez-Sacristán; Carles Hernandez-Ferrer; Juan R. González; Laura Inés Furlong (Bioinform., 2017)

MultiDataSet: an R package for encapsulating multiple data sets with application to omic data integration. - Carles Hernandez-Ferrer; Carlos Ruiz-Arenas; Alba Beltran-Gomila; Juan R. González (BMC Bioinform., 2017)

CTDquerier: a bioconductor R package for Comparative Toxicogenomics DatabaseTM data extraction, visualization and enrichment of environmental and toxicological studies. - Carles Hernandez-Ferrer; Juan R. González (Bioinform., 2018)

Comprehensive study of the exposome and omic data using rexposome Bioconductor Packages. - Carles Hernandez-Ferrer; Gregory A. Wellenius; Ibon Tamayo; Xavier Basagaña; Jordi Sunyer; Martine Vrijheid; Juan R. González (Bioinform., 2019)

Assessment of Coverage for Endogenous Metabolites and Exogenous Chemical Compounds Using anUntargeted Metabolomics Platform. - Sek Won Kong; Carles Hernandez-Ferrer (PSB, 2020)

WEScover: selection between clinical whole exome sequencing and gene panel testing. - In-Hee Lee 001; Yufei Lin; William Jefferson Alvarez; Carles Hernandez-Ferrer; Kenneth D. Mandl; Sek Won Kong (BMC Bioinform., 2021)