The Coevolution of Mutation Rates. - Carlo C. Maley (ECAL, 1995)

DNA Computation: Theory, Practice, and Prospects. - Carlo C. Maley (Evol. Comput., 1998)

The evolution of biodiversity: a simulation approach. - Carlo C. Maley (1998)

Exploring the Relationship Between Neutral and Selective Mutations in Cancer. - Carlo C. Maley; Stephanie Forrest (Artif. Life, 2000)

Selective Instability: Maternal Effort and the Evolution of Gene Activation and Deactivation Rates. - Carlo C. Maley; Stephen J. Tapscott (Artif. Life, 2003)

Animal Cell Differentiation Patterns Suppress Somatic Evolution. - John W. Pepper; Kathleen Sprouffske; Carlo C. Maley (PLoS Comput. Biol., 2007)

Bulk Genotyping of Biopsies Can Create Spurious Evidence for Hetereogeneity in Mutation Content. - Rumen Kostadinov; Carlo C. Maley; Mary K. Kuhner (PLoS Comput. Biol., 2016)

Prediction of occult invasive disease in ductal carcinoma in situ using computer-extracted mammographic features. - Bibo Shi; Lars J. Grimm; Maciej A. Mazurowski; Jeffrey R. Marks; Lorraine M. King; Carlo C. Maley; Eun-Sil Shelley Hwang; Joseph Y. Lo (Computer-Aided Diagnosis, 2017)

Can upstaging of ductal carcinoma in situ be predicted at biopsy by histologic and mammographic features? - Bibo Shi; Lars J. Grimm; Maciej A. Mazurowski; Jeffrey R. Marks; Lorraine M. King; Carlo C. Maley; Eun-Sil Shelley Hwang; Joseph Y. Lo (Computer-Aided Diagnosis, 2017)

Improving classification with forced labeling of other related classes: application to prediction of upstaged ductal carcinoma in situ using mammographic features. - Rui Hou 002; Bibo Shi; Lars J. Grimm; Maciej A. Mazurowski; Jeffrey R. Marks; Lorraine M. King; Carlo C. Maley; Eun-Sil Shelley Hwang; Joseph Y. Lo (Computer-Aided Diagnosis, 2018)

Learning better deep features for the prediction of occult invasive disease in ductal carcinoma in situ through transfer learning. - Bibo Shi; Rui Hou 002; Maciej A. Mazurowski; Lars J. Grimm; Yinhao Ren; Jeffrey R. Marks; Lorraine M. King; Carlo C. Maley; Eun-Sil Shelley Hwang; Joseph Y. Lo (Computer-Aided Diagnosis, 2018)

Malignant microcalcification clusters detection using unsupervised deep autoencoders. - Rui Hou 002; Yinhao Ren; Lars J. Grimm; Maciej A. Mazurowski; Jeffrey R. Marks; Lorraine M. King; Carlo C. Maley; Eun-Sil Shelley Hwang; Joseph Y. Lo (Computer-Aided Diagnosis, 2019)

A multitask deep learning method in simultaneously predicting occult invasive disease in ductal carcinoma in-situ and segmenting microcalcifications in mammography. - Rui Hou 002; Lars J. Grimm; Maciej A. Mazurowski; Jeffrey R. Marks; Lorraine M. King; Carlo C. Maley; Eun-Sil Shelley Hwang; Joseph Y. Lo (Computer-Aided Diagnosis, 2020)

Prediction of Upstaged Ductal Carcinoma In Situ Using Forced Labeling and Domain Adaptation. - Rui Hou 002; Maciej A. Mazurowski; Lars J. Grimm; Jeffrey R. Marks; Lorraine M. King; Carlo C. Maley; Eun-Sil Shelley Hwang; Joseph Y. Lo (IEEE Trans. Biomed. Eng., 2020)

Wisdom Of The Crowd For Early Detection In Barrett's Esophagus. - Justin Law; Thomas G. Paulson; Carissa A. Sanchez; Patricia C. Galipeau; Marnix Jansen; Matthew D. Stachler; Carlo C. Maley; Yinyin Yuan (ISBI, 2021)

A new method to accurately identify single nucleotide variants using small FFPE breast samples. - Angelo Fortunato; Diego Mallo; Shawn M. Rupp; Lorraine M. King; Timothy Hardman; Joseph Y. Lo; Allison H. Hall; Jeffrey R. Marks; Eun-Sil Shelley Hwang; Carlo C. Maley (Briefings Bioinform., 2021)

Challenges in cybersecurity: Lessons from biological defense systems. - Edward C. Schrom II; Ann Kinzig; Stephanie Forrest; Andrea L. Graham; Simon A. Levin; Carl T. Bergstrom; Carlos Castillo-Chavez; James P. Collins 002; Rob J. De Boer; Adam Doupé; Roya Ensafi; Stuart I. Feldman; et al. (CoRR, 2021)

Automated Dcis Identification From Multiplex Immunohistochemistry Using Generative Adversarial Networks. - Faranak Sobhani; Azam Hamidinekoo; Allison H. Hall; Lorraine M. King; Jeffrey R. Marks; Carlo C. Maley; Hugo M. Horlings; Eun-Sil Shelley Hwang; Yinyin Yuan (ISBI, 2022)

DCIS AI-TIL: Ductal Carcinoma In Situ Tumour Infiltrating Lymphocyte Scoring Using Artificial Intelligence. - Yeman Brhane Hagos; Faranak Sobhani; Simon P. Castillo; Allison H. Hall; Khalid AbdulJabbar; Roberto Salgado; Bryan Harmon; Kristalyn Gallagher; Mark Kilgore; Lorraine M. King; Jeffrey R. Marks; Carlo C. Maley; et al. (AIIIMA/MIABID@MICCAI, 2022)

Anomaly Detection of Calcifications in Mammography Based on 11, 000 Negative Cases. - Rui Hou 002; Yifan Peng 004; Lars J. Grimm; Yinhao Ren; Maciej A. Mazurowski; Jeffrey R. Marks; Lorraine M. King; Carlo C. Maley; Eun-Sil Shelley Hwang; Joseph Y. Lo (IEEE Trans. Biomed. Eng., 2022)

Capturing Cancer as Music: Cancer Mechanisms Expressed through Musification. - Rostyslav Hnatyshyn; Jiayi Hong; Ross Maciejewski; Christopher Norby; Carlo C. Maley (CHI, 2024)

Predicting DNA Content Abnormalities in Barrett's Esophagus: A Weakly Supervised Learning Paradigm. - Caner Ercan; Xiaoxi Pan; Thomas G. Paulson; Matthew D. Stachler; Carlo C. Maley; William M. Grady; Yinyin Yuan (MIDL, 2024)