PLUMED: A portable plugin for free-energy calculations with molecular dynamics. - Massimiliano Bonomi; Davide Branduardi; Giovanni Bussi; Carlo Camilloni; Davide Provasi; Paolo Raiteri; Davide Donadio; Fabrizio Marinelli 002; Fabio Pietrucci; Ricardo A. Broglia; Michele Parrinello (Comput. Phys. Commun., 2009)

PLUMED 2: New feathers for an old bird. - Gareth A. Tribello; Massimiliano Bonomi; Davide Branduardi; Carlo Camilloni; Giovanni Bussi (Comput. Phys. Commun., 2014)

ALMOST: An all atom molecular simulation toolkit for protein structure determination. - Biao Fu; Aleksandr B. Sahakyan; Carlo Camilloni; Gian Gaetano Tartaglia; Emanuele Paci; Amedeo Caflisch; Michele Vendruscolo; Andrea Cavalli (J. Comput. Chem., 2014)

Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations. - Predrag Kukic; Arvind Kannan; Maurits J. J. Dijkstra; Sanne Abeln; Carlo Camilloni; Michele Vendruscolo (PLoS Comput. Biol., 2015)

Integrative structural and dynamical biology with PLUMED-ISDB. - Massimiliano Bonomi; Carlo Camilloni (Bioinform., 2017)

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins. - Damiano Piovesan; Francesco Tabaro; Lisanna Paladin; Marco Necci; Ivan Micetic; Carlo Camilloni; Norman E. Davey; Zsuzsanna Dosztányi; Bálint Mészáros; Alexander Miguel Monzon; Gustavo D. Parisi; Éva Schád; et al. (Nucleic Acids Res., 2018)

A kinetic ensemble of the Alzheimer's Aβ peptide. - Thomas Löhr; Kai Kohlhoff; Gabriella T. Heller; Carlo Camilloni; Michele Vendruscolo (Nat. Comput. Sci., 2021)

Estimation of Ligand Binding Free Energy Using Multi-eGO. - Bruno Stegani; Emanuele Scalone; Fran Bacic Toplek; Thomas Löhr; Stefano Gianni; Michele Vendruscolo; Riccardo Capelli; Carlo Camilloni (J. Chem. Inf. Model., 2025)