A variational Bayesian mixture modelling framework for cluster analysis of gene-expression data. - Andrew E. Teschendorff; Yanzhong Wang; Nuno L. Barbosa-Morais; James D. Brenton; Carlos Caldas (Bioinform., 2005)

PACK: Profile Analysis using Clustering and Kurtosis to find molecular classifiers in cancer. - Andrew E. Teschendorff; Ali Naderi; Nuno L. Barbosa-Morais; Carlos Caldas (Bioinform., 2006)

Elucidating the Altered Transcriptional Programs in Breast Cancer using Independent Component Analysis. - Andrew E. Teschendorff; Michel Journée; Pierre-Antoine Absil; Rodolphe Sepulchre; Carlos Caldas (PLoS Comput. Biol., 2007)

WSRF-Based Modeling of Clinical Trial Information for Collaborative Cancer Research. - Tianyi Zang; Radu Calinescu; Steve Harris; Andrew Tsui; Marta Z. Kwiatkowska; Jeremy Gibbons; Jim Davies; Peter Maccallum; Carlos Caldas (CCGRID, 2008)

Metamodel-Based Generation of WSRF-Compliant SOA for Collaborative Cancer Research. - Tianyi Zang; Radu Calinescu; Steve Harris; Andrew Tsui; Charles Crichton; Marta Z. Kwiatkowska; Jeremy Gibbons; Jim Davies; James D. Brenton; Carlos Caldas (eScience, 2008)

A sparse regulatory network of copy-number driven expression reveals putative breast cancer oncogenes. - Yinyin Yuan; Christina Curtis; Carlos Caldas; Florian Markowetz (BIBM, 2010)

Allele-specific expression analysis methods for high-density SNP microarray data. - Ruijie Liu; Ana-Teresa Maia; Roslin Russell; Carlos Caldas; Bruce A. Ponder; Matthew E. Ritchie (Bioinform., 2012)

A Sparse Regulatory Network of Copy-Number Driven Gene Expression Reveals Putative Breast Cancer Oncogenes. - Yinyin Yuan; Christina Curtis; Carlos Caldas; Florian Markowetz (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

A metadata-aware application for remote scoring and exchange of tissue microarray images. - Lorna Morris; Andrew Tsui; Charles Crichton; Steve Harris; Peter Maccallum; William J. Howat; Jim Davies; James D. Brenton; Carlos Caldas (BMC Bioinform., 2013)

Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling. - Erhan Bilal; Janusz Dutkowski; Justin Guinney; In Sock Jang; Benjamin A. Logsdon; Gaurav Pandey 002; Benjamin A. Sauerwine; Yishai Shimoni; Hans Kristian Moen Vollan; Brigham H. Mecham; Oscar M. Rueda; Jorg Tost; et al. (PLoS Comput. Biol., 2013)

Intra-Tumour Signalling Entropy Determines Clinical Outcome in Breast and Lung Cancer. - Christopher R. S. Banerji; Simone Severini; Carlos Caldas; Andrew E. Teschendorff (PLoS Comput. Biol., 2015)

Dynamics of breast-cancer relapse reveal late-recurring ER-positive genomic subgroups. - Oscar M. Rueda; Stephen John Sammut; José A. Seoane; Suet-Feung Chin; Jennifer L. Caswell-Jin; Maurizio Callari; Rajbir Nath Batra; Bernard Pereira; Alejandra Bruna; H. Raza Ali; Elena Provenzano; Bin Liu; et al. (Nat., 2019)

3D deformable registration of longitudinal abdominopelvic CT images using unsupervised deep learning. - Maureen van Eijnatten; Leonardo Rundo; Kees Joost Batenburg; Felix Lucka; Emma Beddowes; Carlos Caldas; Ferdia A. Gallagher; Evis Sala; Carola-Bibiane Schönlieb; Ramona Woitek (Comput. Methods Programs Biomed., 2021)