Some integer programs arising in the design of main frame computers. - Carlos E. Ferreira; Martin Grötschel; Alexander Martin 001; Robert Weismantel; Stefan Kiefl; Ludwig Krispenz (ZOR Methods Model. Oper. Res., 1993)

On combinatorial optimization problems arising in computer system design. - Carlos E. Ferreira (1994)

Formulations and valid inequalities for the node capacitated graph partitioning problem. - Carlos Eduardo Ferreira; Alexander Martin 001; C. Carvalho de Souza; Robert Weismantel; Laurence A. Wolsey (Math. Program., 1996)

Solving Multiple Knapsack Problems by Cutting Planes. - Carlos E. Ferreira; Alexander Martin 001; Robert Weismantel (SIAM J. Optim., 1996)

The node capacitated graph partitioning problem: A computational study. - Carlos Eduardo Ferreira; Alexander Martin 001; C. Carvalho de Souza; Robert Weismantel; Laurence A. Wolsey (Math. Program., 1998)

Decomposing Matrices into Blocks. - Ralf Borndörfer; Carlos E. Ferreira; Alexander Martin 001 (SIAM J. Optim., 1998)

A Combinatorial Optimization Technique for the Sequential Decomposition of Erosions and Dilations. - Ronaldo Fumio Hashimoto; Junior Barrera; Carlos Eduardo Ferreira (J. Math. Imaging Vis., 2000)

DNA Fragments Assembly Programs: a comparative study. - Said Sadique Adi; Carlos Eduardo Ferreira (Electron. Notes Discret. Math., 2001)

Rearrangement of DNA fragments: a branch-and-cut algorithm. - Carlos Eduardo Ferreira; C. Carvalho de Souza; Yoshiko Wakabayashi (Discret. Appl. Math., 2002)

Estimates for the spreading velocity of an epidemic model. - O. Alves; Carlos Eduardo Ferreira; Fabio Prates Machado (Math. Comput. Simul., 2004)

Gene Prediction by Syntenic Alignment. - Said Sadique Adi; Carlos Eduardo Ferreira (BSB, 2005)

Gene prediction by multiple syntenic alignment. - Said Sadique Adi; Carlos Eduardo Ferreira (J. Integr. Bioinform., 2005)

Evaluating different methods of microarray data normalization. - André Fujita; João Ricardo Sato; Leonardo de Oliveira Rodrigues; Carlos Eduardo Ferreira; Mari Cleide Sogayar (BMC Bioinform., 2006)

Some formulations for the group steiner tree problem. - Carlos Eduardo Ferreira; Fernando Mário de Oliveira Filho (Discret. Appl. Math., 2006)

New Reduction Techniques for the Group Steiner Tree Problem. - Carlos Eduardo Ferreira; Fernando Mário de Oliveira Filho (SIAM J. Optim., 2006)

Time-varying modeling of gene expression regulatory networks using the wavelet dynamic vector autoregressive method. - André Fujita; João Ricardo Sato; Humberto Miguel Garay-Malpartida; Pedro Alberto Morettin; Mari Cleide Sogayar; Carlos Eduardo Ferreira (Bioinform., 2007)

GEDI: a user-friendly toolbox for analysis of large-scale gene expression data. - André Fujita; João Ricardo Sato; Carlos Eduardo Ferreira; Mari Cleide Sogayar (BMC Bioinform., 2007)

Modeling gene expression regulatory networks with the sparse vector autoregressive model. - André Fujita; João Ricardo Sato; Humberto Miguel Garay-Malpartida; Rui Yamaguchi; Satoru Miyano; Mari Cleide Sogayar; Carlos Eduardo Ferreira (BMC Syst. Biol., 2007)

Primal-dual approximation algorithms for the Prize-Collecting Steiner Tree Problem. - Paulo Feofiloff; Cristina G. Fernandes; Carlos Eduardo Ferreira; José Coelho de Pina (Inf. Process. Lett., 2007)

A Polyhedral Investigation of the LCS Problem and a Repetition-Free Variant. - Cristina G. Fernandes; Carlos Eduardo Ferreira; Christian Tjandraatmadja; Yoshiko Wakabayashi (LATIN, 2008)

Modeling Nonlinear Gene Regulatory Networks from Time Series Gene Expression Data. - André Fujita; João Ricardo Sato; Humberto Miguel Garay-Malpartida; Mari Cleide Sogayar; Carlos Eduardo Ferreira; Satoru Miyano (J. Bioinform. Comput. Biol., 2008)

Preface. - Thomas M. Liebling; Jayme Luiz Szwarcfiter; Carlos Eduardo Ferreira; Fábio Protti (Electron. Notes Discret. Math., 2009)

Parallelisation of a multi-neighbourhood local search heuristic for a phylogeny problem. - Gerardo Valdisio R. Viana; Fernando A. C. Gomes; Carlos E. Ferreira; Cláudio Nogueira de Meneses (Int. J. Bioinform. Res. Appl., 2009)

Comparing Pearson, Spearman and Hoeffding's d Measure for Gene Expression Association Analysis. - André Fujita; João Ricardo Sato; Marcos Angelo Almeida Demasi; Mari Cleide Sogayar; Carlos Eduardo Ferreira; Satoru Miyano (J. Bioinform. Comput. Biol., 2009)

A Column Generation Approach for the Graph Matching Problem. - Alexandre S. Freire; R. M. Cesar Jr.; Carlos Eduardo Ferreira (ICPR, 2010)

A note on Johnson, Minkoff and Phillips' algorithm for the Prize-Collecting Steiner Tree Problem - Paulo Feofiloff; Cristina G. Fernandes; Carlos Eduardo Ferreira; José Coelho de Pina (CoRR, 2010)

Repetition-free longest common subsequence. - Said Sadique Adi; Marília D. V. Braga; Cristina G. Fernandes; Carlos Eduardo Ferreira; Fábio Viduani Martinez; Marie-France Sagot; Marco Aurelio Stefanes; Christian Tjandraatmadja; Yoshiko Wakabayashi (Discret. Appl. Math., 2010)

The biclique k-clustering problem in bipartite graphs and its application in bioinformatics. - Vicente Acuña; Carlos Eduardo Ferreira; Alexandre S. Freire; Eduardo Moreno 001 (Electron. Notes Discret. Math., 2010)

A branch-and-cut approach to the repetition-free longest common subsequence problem. - Carlos Eduardo Ferreira; Christian Tjandraatmadja (Electron. Notes Discret. Math., 2010)

Selfish Square Packing. - Cristina G. Fernandes; Carlos Eduardo Ferreira; Flavio Keidi Miyazawa; Yoshiko Wakabayashi (Electron. Notes Discret. Math., 2011)

A dynamic programming algorithm for the tree mapping problem. - Carlos Eduardo Ferreira; Alexandre S. Freire; G. A. Puglia (Electron. Notes Discret. Math., 2011)

Inferring Contagion in Regulatory Networks. - André Fujita; João Ricardo Sato; Marcos Angelo Almeida Demasi; Rui Yamaguchi; Teppei Shimamura; Carlos Eduardo Ferreira; Mari Cleide Sogayar; Satoru Miyano (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Minimum Ratio Cover of Matrix Columns by Extreme Rays of Its Induced Cone. - Alexandre S. Freire; Vicente Acuña; Pilu Crescenzi; Carlos Eduardo Ferreira; Vincent Lacroix; Paulo Vieira Milreu; Eduardo Moreno 001; Marie-France Sagot (ISCO, 2012)

Algorithms for Junctions in Directed Acyclic Graphs - Carlos Eduardo Ferreira; Álvaro Junio Pereira Franco (CoRR, 2012)

Discriminating different classes of biological networks by analyzing the graphs spectra distribution - Daniel Yasumasa Takahashi; João Ricardo Sato; Carlos Eduardo Ferreira; André Fujita (CoRR, 2012)

V Latin-American Algorithms, Graphs, and Optimization Symposium - Gramado, Brazil, 2009. - Carlos Eduardo Ferreira; Fábio Protti; Jayme Luiz Szwarcfiter (Discret. Appl. Math., 2012)

Mathematical Models and Polyhedral Studies for Integral Sheet Metal Design. - Carlos Eduardo Ferreira; Ute Günther; Alexander Martin 001 (SIAM J. Optim., 2012)

The Unit-Demand Envy-Free Pricing Problem. - Cristina G. Fernandes; Carlos Eduardo Ferreira; Álvaro Junio Pereira Franco; Rafael Crivellari Saliba Schouery (CoRR, 2013)

Syntenic global alignment and its application to the gene prediction problem. - Said Sadique Adi; Carlos Eduardo Ferreira (J. Braz. Comput. Soc., 2013)

Finding Matrimonial Circuits in some Amerindian Kinship Networks: An Experimental Study. - Carlos Eduardo Ferreira; Álvaro Junio Pereira Franco; Marcio Ferreira da Silva (eScience, 2014)

The Envy-Free Pricing Problem and Unit-Demand Markets. - Cristina G. Fernandes; Carlos Eduardo Ferreira; Álvaro Junio Pereira Franco; Rafael Crivellari Saliba Schouery (ISCO, 2014)

The U-curve optimization problem: improvements on the original algorithm and time complexity analysis. - Marcelo da Silva Reis; Carlos Eduardo Ferreira; Junior Barrera (CoRR, 2014)

Solving the maximum edge biclique packing problem on unbalanced bipartite graphs. - Vicente Acuña; Carlos Eduardo Ferreira; Alexandre S. Freire; Eduardo Moreno 001 (Discret. Appl. Math., 2014)

PTAS's for Some Metric p-source Communication Spanning Tree Problems. - Santiago Valdés Ravelo; Carlos E. Ferreira (WALCOM, 2015)

A min-max relation in flowgraphs. - Carlos E. Ferreira; Álvaro Junio Pereira Franco (Electron. Notes Discret. Math., 2015)

The envy-free pricing problem, unit-demand markets and connections with the network pricing problem. - Cristina G. Fernandes; Carlos E. Ferreira; Álvaro Junio Pereira Franco; Rafael Crivellari Saliba Schouery (Discret. Optim., 2016)

A PTAS for the metric case of the minimum sum-requirement communication spanning tree problem. - Santiago Valdés Ravelo; Carlos Eduardo Ferreira (Discret. Appl. Math., 2017)

featsel: A framework for benchmarking of feature selection algorithms and cost functions. - Marcelo da Silva Reis; Gustavo Estrela; Carlos Eduardo Ferreira; Junior Barrera (SoftwareX, 2017)

A min-max relation in flowgraphs and some applications. - Carlos Eduardo Ferreira; Álvaro Junio Pereira Franco (Discret. Appl. Math., 2018)

Prices of Anarchy of Selfish 2D Bin Packing Games. - Cristina G. Fernandes; Carlos E. Ferreira; Flávio Keidi Miyazawa; Yoshiko Wakabayashi (Int. J. Found. Comput. Sci., 2019)

Optimal Boolean lattice-based algorithms for the U-curve optimization problem. - Marcelo da Silva Reis; Gustavo Estrela; Carlos Eduardo Ferreira; Junior Barrera (Inf. Sci., 2019)

A PTAS for the metric case of the optimum weighted source-destination communication spanning tree problem. - Santiago Valdés Ravelo; Carlos Eduardo Ferreira (Theor. Comput. Sci., 2019)

An Efficient, Parallelized Algorithm for Optimal Conditional Entropy-Based Feature Selection. - Gustavo Estrela; Marco Dimas Gubitoso; Carlos Eduardo Ferreira; Junior Barrera; Marcelo da Silva Reis (Entropy, 2020)

Preface: LAGOS'21 - XI Latin and American Algorithms, Graphs, and Optimization Symposium - São Paulo - Brazil. - Carlos Eduardo Ferreira; Flavio Keidi Miyazawa; Orlando Lee (Discret. Appl. Math., 2023)