How frequently do clusters occur in hierarchical clustering analysis? A graph theoretical approach to studying ties in proximity. - Wilmer Leal; Eugenio-José Llanos; Guillermo Restrepo; Carlos F. Suárez; Manuel-Elkin Patarroyo (J. Cheminformatics, 2016)

Assessing Peptide Binding to MHC II: An Accurate Semiempirical Quantum Mechanics Based Proposal. - Carlos A. Ortiz-Mahecha; Hugo-Javier Bohórquez; William A. Agudelo; Manuel A. Patarroyo; Manuel-Elkin Patarroyo; Carlos F. Suárez (J. Chem. Inf. Model., 2019)

MHCBI: a pipeline for calculating peptide-MHC binding energy using semi-empirical quantum mechanical methods with explicit/implicit solvent models. - Carlos A. Ortiz-Mahecha; William A. Agudelo; Manuel A. Patarroyo; Manuel-Elkin Patarroyo; Carlos F. Suárez (Briefings Bioinform., 2021)