Using Structural Signatures for Identifying Globins: the Intra-Subunit Electrostatic Interactions. - Tiago Adriano de Knegt López de Prado; Wagner Meira Jr.; Marcelo M. Santoro; Márcio de Carvalho; Rodrigo L. Carceroni; Carlos H. Silveira; Raquel C. de Melo; Fabiano A. Fonseca (WOB, 2003)

An Image-Matching Approach to Protein Similarity Analysis. - Fernando A. Fernandes Jr.; Rodrigo L. Carceroni; Carlos Eduardo R. Lopes; Wagner Meira Jr.; Raquel C. de Melo; Arnaldo de Albuquerque Araújo; Marcelo M. Santoro; Carlos H. Silveira (SIBGRAPI, 2004)

ADVISe: Visualizing the dynamics of enzyme annotations in UniProt/Swiss-Prot. - Sabrina de Azevedo Silveira; Artur O. Rodrigues; Raquel Cardoso de Melo Minardi; Carlos Henrique da Silveira; Wagner Meira Jr. (BioVis, 2012)

HydroPaCe: understanding and predicting cross-inhibition in serine proteases through hydrophobic patch centroids. - Valdete M. Gonçalves-Almeida; Douglas E. V. Pires; Raquel Cardoso de Melo Minardi; Carlos Henrique da Silveira; Wagner Meira Jr.; Marcelo M. Santoro (Bioinform., 2012)

aCSM: noise-free graph-based signatures to large-scale receptor-based ligand prediction. - Douglas E. V. Pires; Raquel Cardoso de Melo Minardi; Carlos Henrique da Silveira; Frederico F. Campos; Wagner Meira Jr. (Bioinform., 2013)

PDBest: a user-friendly platform for manipulating and enhancing protein structures. - Wellisson R. S. Gonçalves; Valdete M. Gonçalves-Almeida; Aleksander L. Arruda; Wagner Meira Jr.; Carlos Henrique da Silveira; Douglas E. V. Pires; Raquel Cardoso de Melo Minardi (Bioinform., 2015)

GReMLIN: A Graph Mining Strategy to Infer Protein-Ligand Interaction Patterns. - Charles Abreu Santana; Fabio Ribeiro Cerqueira; Carlos Henrique da Silveira; Alexandre V. Fassio; Raquel Cardoso de Melo Minardi; Sabrina de Azevedo Silveira (BIBE, 2016)

CALI: A Novel Visual Model for Frequent Pattern Mining in Protein-Ligand Graphs. - Susana Medina G.; Alexandre Victor Fassio; Sabrina de Azevedo Silveira; Carlos Henrique da Silveira; Raquel Cardoso de Melo Minardi (BIBE, 2017)

An Interactive Strategy to Visualize Common Subgraphs in Protein-Ligand Interaction. - Alexandre V. Fassio; Charles Abreu Santana; Fabio Ribeiro Cerqueira; Carlos Henrique da Silveira; João P. R. Romanelli; Raquel Cardoso de Melo Minardi; Sabrina de Azevedo Silveira (IWBBIO (1), 2018)

How to compute protein residue contacts more accurately? - Pedro M. Martins 001; Vinícius D. Mayrink; Sabrina de Azevedo Silveira; Carlos Henrique da Silveira; Leonardo H. F. de Lima; Raquel Cardoso de Melo Minardi (SAC, 2018)

Protein Structural Signatures Revisited: Geometric Linearity of Main Chains are More Relevant to Classification Performance than Packing of Residues. - João Arthur F. Gadelha Campelo; Cleiton Rodrigues Monteiro; Carlos Henrique da Silveira; Sabrina de Azevedo Silveira; Raquel Cardoso de Melo Minardi (IWBBIO (1), 2019)

EasyVS: a user-friendly web-based tool for molecule library selection and structure-based virtual screening. - Douglas E. V. Pires; Wandré N. P. Veloso; Yoochan Myung; Carlos H. M. Rodrigues; Michael Silk; Pâmela M. Rezende; Francislon Silva; Joicymara S. Xavier; João P. L. Velloso; Carlos Henrique da Silveira; David B. Ascher (Bioinform., 2020)