Homology Modeling of Proteins Using Multiple Models and Consensus Sequence Alignment. - Jahnavi C. Prasad; Michael Silberstein; Carlos J. Camacho; Sandor Vajda (WABI, 2003)

Consensus alignment for reliable framework prediction in homology modeling. - Jahnavi C. Prasad; Stephen R. Comeau; Sandor Vajda; Carlos J. Camacho (Bioinform., 2003)

What Works (and What Doesn't) in Estimating the Change in Free Energy due to Point Mutations in the Protein Interior. - Marta Bueno; Carlos J. Camacho; Javier Sancho (Spanish Bioinformatics Conference, 2004)

ClusPro: an automated docking and discrimination method for the prediction of protein complexes. - Stephen R. Comeau; David W. Gatchell; Sandor Vajda; Carlos J. Camacho (Bioinform., 2004)

ClusPro: a fully automated algorithm for protein-protein docking. - Stephen R. Comeau; David W. Gatchell; Sandor Vajda; Carlos J. Camacho (Nucleic Acids Res., 2004)

Consensus alignment server for reliable comparative modeling with distant templates. - Jahnavi C. Prasad; Sandor Vajda; Carlos J. Camacho (Nucleic Acids Res., 2004)

FastContact: rapid estimate of contact and binding free energies. - Carlos J. Camacho; Chao Zhang (Bioinform., 2005)

FastContact: a free energy scoring tool for protein-protein complex structures. - P. Christoph Champ; Carlos J. Camacho (Nucleic Acids Res., 2007)

Structural and Thermodynamic Approach to Peptide Immunogenicity. - Carlos J. Camacho; Yasuhiro Katsumata; Dana P. Ascherman (PLoS Comput. Biol., 2008)

Optimization of minimum set of protein-DNA interactions: a quasi exact solution with minimum over-fitting. - N. A. Temiz; Andrew C. Trapp; Oleg A. Prokopyev; Carlos J. Camacho (Bioinform., 2010)

ANCHOR: a web server and database for analysis of protein-protein interaction binding pockets for drug discovery. - Lidio M. C. Meireles; Alexander S. Dömling; Carlos J. Camacho (Nucleic Acids Res., 2010)

Pharmer: Efficient and Exact Pharmacophore Search. - David Ryan Koes; Carlos J. Camacho (J. Chem. Inf. Model., 2011)

Small-molecule inhibitor starting points learned from protein-protein interaction inhibitor structure. - David Ryan Koes; Carlos J. Camacho (Bioinform., 2012)

PocketQuery: protein-protein interaction inhibitor starting points from protein-protein interaction structure. - David Ryan Koes; Carlos J. Camacho (Nucleic Acids Res., 2012)

ZINCPharmer: pharmacophore search of the ZINC database. - David Ryan Koes; Carlos J. Camacho (Nucleic Acids Res., 2012)

Lessons Learned in Empirical Scoring with smina from the CSAR 2011 Benchmarking Exercise. - David Ryan Koes; Matthew P. Baumgartner; Carlos J. Camacho (J. Chem. Inf. Model., 2013)

Shape-based virtual screening with volumetric aligned molecular shapes. - David Ryan Koes; Carlos J. Camacho (J. Comput. Chem., 2014)

Indexing volumetric shapes with matching and packing. - David Ryan Koes; Carlos J. Camacho (Knowl. Inf. Syst., 2015)

Optimal strategies for virtual screening of induced-fit and flexible target in the 2015 D3R Grand Challenge. - Zhaofeng Ye; Matthew P. Baumgartner; Bentley M. Wingert; Carlos J. Camacho (J. Comput. Aided Mol. Des., 2016)

Choosing the Optimal Rigid Receptor for Docking and Scoring in the CSAR 2013/2014 Experiment. - Matthew P. Baumgartner; Carlos J. Camacho (J. Chem. Inf. Model., 2016)

Optimal affinity ranking for automated virtual screening validated in prospective D3R grand challenges. - Bentley M. Wingert; Rick Oerlemans; Carlos J. Camacho (J. Comput. Aided Mol. Des., 2018)

Predicting protein targets for drug-like compounds using transcriptomics. - Nicolas A. Pabon; Yan Xia; Samuel K. Estabrooks; Zhaofeng Ye; Amanda K. Herbrand; Evelyn Süß; Ricardo M. Biondi; Victoria A. Assimon; Jason E. Gestwicki; Jeffrey L. Brodsky; Carlos J. Camacho; Ziv Bar-Joseph (PLoS Comput. Biol., 2018)