PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data. - Rafael Hernández-de-Diego; Sonia Tarazona; Carlos Martínez-Mira; Leandro Balzano-Nogueira; Pedro Furió-Tarí; Georgios Joannis Pappas Jr.; Ana Conesa (Nucleic Acids Res., 2018)

PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases. - Tianyuan Liu; Pedro Salguero; Marko Petek; Carlos Martínez-Mira; Leandro Balzano-Nogueira; Ziva Ramsak; Lauren McIntyre; Kristina Gruden; Sonia Tarazona; Ana Conesa (Nucleic Acids Res., 2022)

MOSim: bulk and single-cell multilayer regulatory network simulator. - Carolina Monzó; Maider Aguerralde-Martin; Carlos Martínez-Mira; Angeles Arzalluz-Luque; Ana Conesa; Sonia Tarazona (Briefings Bioinform., 2025)