A unified geometric model for 3D confocal image analysis in cytology. - Alessandro Sarti; Carlos Ortiz-de-Solorzano; Stephen J. Lockett; Ravi Malladi (SIBGRAPI, 1998)

A geometric model for 3-D confocal image analysis. - Alessandro Sarti; Carlos Ortiz-de-Solorzano; Stephen J. Lockett; Ravi Malladi (IEEE Trans. Biomed. Eng., 2000)

A Tool for the Quantitative Spatial Analysis of Complex Cellular Systems. - Rodrigo Fernandez-Gonzalez; Mary Helen Barcellos-Hoff; Carlos Ortiz-de-Solorzano (IEEE Trans. Image Process., 2005)

Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization. - Ignacio Arganda-Carreras; Carlos Oscar Sánchez Sorzano; Roberto Marabini; José María Carazo; Carlos Ortiz-de-Solorzano; Jan Kybic (CVAMIA, 2006)

High-throughput analysis of multispectral images of breast cancer tissue. - U. Adiga; Ravi Malladi; Rodrigo Fernandez-Gonzalez; Carlos Ortiz-de-Solorzano (IEEE Trans. Image Process., 2006)

Restoration of Biomedical Images using Locally Adaptive B-Spline Smoothing. - Xabier Artaechevarria; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (ICIP (2), 2007)

Restoration of Micro-Ct Images Using Locally Adaptive B-Spline Smoothing. - Xabier Artaechevarria; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (ISBI, 2007)

Automation of the detection of lung cancer cells in minimal samples of bronchioalveolar lavage. - Carlos Ortiz-de-Solorzano; Thomas Pengo; Miguel Galarraga; Arrate Muñoz-Barrutia (ISBI, 2008)

Efficient classifier generation and weighted voting for atlas-based segmentation: two small steps faster and closer to the combination oracle. - Xabier Artaechevarria; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solórzano (Image Processing, 2008)

Segmentation of Touching Cell Nuclei Using a Two-Stage Graph Cut Model. - Ondrej Danek; Pavel Matula; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia; Martin Maska; Michal Kozubek 001 (SCIA, 2009)

A Two-Phase Segmentation of Cell Nuclei Using Fast Level Set-Like Algorithms. - Martin Maska; Ondrej Danek; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia; Michal Kozubek 001; Ignacio Fernández García (SCIA, 2009)

Combination Strategies in Multi-Atlas Image Segmentation: Application to Brain MR Data. - Xabier Artaechevarria; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (IEEE Trans. Medical Imaging, 2009)

Automatic leakage detection and recovery for airway tree extraction in chest CT images. - Mario Ceresa; Xabier Artaechevarria; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (ISBI, 2010)

Spatially Variant Convolution With Scaled B-Splines. - Arrate Muñoz-Barrutia; Xabier Artaechevarria; Carlos Ortiz-de-Solorzano (IEEE Trans. Image Process., 2010)

Characterization of emphysema in low dose computed tomography images using maximum likelihood estimation of the scale exponent. - Mario Ceresa; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (ISBI, 2012)

Fast tracking of fluorescent cells based on the Chan-Vese model. - Martin Maska; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (ISBI, 2012)

Individual nodule tracking in micro-CT images of a mouse model of lung cancer. - Rina Dewi Rudyanto; Ainhoa Agirre; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia (ISBI, 2012)

Detecting airway remodeling in COPD and emphysema using low-dose CT imaging. - Rina Dewi Rudyanto; Mario Ceresa; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solórzano (Computer-Aided Diagnosis, 2012)

Quantification of Lung Damage in an Elastase-Induced Mouse Model of Emphysema. - Arrate Muñoz-Barrutia; Mario Ceresa; Xabier Artaechevarria; Luis M. Montuenga; Carlos Ortiz-de-Solorzano (Int. J. Biomed. Imaging, 2012)

Registration of multiple stained histological sections. - Jirí Borovec; Jan Kybic; Michael Busta; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia (ISBI, 2013)

Automatic quantification of filopodia-based cell migration. - Martin Maska; Xabier Morales; Arrate Muñoz-Barrutia; Ana Rouzaut; Carlos Ortiz-de-Solorzano (ISBI, 2013)

Modeling airway probability. - Rina Dewi Rudyanto; Arrate Muñoz-Barrutia; Alejandro A. Díaz 001; James C. Ross; George R. Washko; Carlos Ortiz-de-Solorzano; Raúl San José Estépar (ISBI, 2013)

Individual nodule tracking in micro-CT images of a longitudinal lung cancer mouse model. - Rina Dewi Rudyanto; Gorka Bastarrika; Gabriel de Biurrun; Jackeline Agorreta; Luis M. Montuenga; Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia (Medical Image Anal., 2013)

Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model. - Martin Maska; Ondrej Danek; Saray Garasa; Ana Rouzaut; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (IEEE Trans. Medical Imaging, 2013)

A benchmark for comparison of cell tracking algorithms. - Martin Maska; Vladimír Ulman; David Svoboda; Pavel Matula; Petr Matula; Cristina Ederra; Ainhoa Urbiola; Tomás España; Subramanian Venkatesan 001; Deepak M. W. Balak; Pavel Karas; Tereza Bolcková; et al. (Bioinform., 2014)

A Novel Automated Microscopy Platform for Multiresolution Multispectral Early Detection of Lung Cancer Cells in Bronchoalveolar Lavage Samples. - Thomas Pengo; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (IEEE Syst. J., 2014)

Characterization of the role of collagen network structure and composition in cancer cell migration. - María Anguiano; Carlos Castilla; Martin Maska; Cristina Ederra; Javier Fernández-Marqués; Rafael Peláez; Ana Rouzaut; Arrate Muñoz-Barrutia; Michal Kozubek 001; Carlos Ortiz-de-Solorzano (EMBC, 2015)

Quantification of the 3D collagen network geometry in confocal reflection microscopy. - Martin Maska; Cristina Ederra; Javier Fernández-Marqués; Arrate Muñoz-Barrutia; Michal Kozubek 001; Carlos Ortiz-de-Solorzano (ICIP, 2015)

Atlas-based segmentation of brainstem regions in neuromelanin-sensitive magnetic resonance images. - Marc Puigvert; Gabriel Castellanos; Javier Uranga; Ricardo C. Abad; María A. Fernández-Seara; Pau Pastor; María A. Pastor; Arrate Muñoz-Barrutia; Carlos Ortiz-de-Solorzano (Computer-Aided Diagnosis, 2015)

Quantification of pulmonary vessel diameter in low-dose CT images. - Rina Dewi Rudyanto; Carlos Ortiz-de-Solórzano; Arrate Muñoz-Barrutia (Computer-Aided Diagnosis, 2015)

Toward a Morphodynamic Model of the Cell: Signal processing for cell modeling. - Carlos Ortiz-de-Solorzano; Arrate Muñoz-Barrutia; Erik Meijering; Michal Kozubek 001 (IEEE Signal Process. Mag., 2015)

Segmentation of actin-stained 3D fluorescent cells with filopodial protrusions using convolutional neural networks. - Carlos Castilla; Martin Maska; Dmitry V. Sorokin; Erik Meijering; Carlos Ortiz-de-Solorzano (ISBI, 2018)

Dynamic Atlas-Based Segmentation and Quantification of Neuromelanin-Rich Brainstem Structures in Parkinson Disease. - Mikel Ariz; Ricardo C. Abad; Gabriel Castellanos; Martin Martinez; Arrate Muñoz-Barrutia; María A. Fernández-Seara; Pau Pastor; María A. Pastor; Carlos Ortiz-de-Solorzano (IEEE Trans. Medical Imaging, 2019)

3-D Quantification of Filopodia in Motile Cancer Cells. - Carlos Castilla; Martin Maska; Dmitry V. Sorokin; Erik Meijering; Carlos Ortiz-de-Solorzano (IEEE Trans. Medical Imaging, 2019)

Unsupervised Learning of Contextual Information in Multiplex Immunofluorescence Tissue Cytometry. - Daniel Jiménez Sánchez; Mikel Ariz; Carlos Ortiz-de-Solórzano (ISBI, 2020)

NMF-RI: blind spectral unmixing of highly mixed multispectral flow and image cytometry data. - Daniel Jimenez-Carretero; Mikel Ariz; José Mário T. Morgado; Iván Cortés-Domínguez; Carlos Ortiz-de-Solórzano (Bioinform., 2020)

Raw data used in the manuscript "The use of mixed collagen-Matrigel matrices of increasing complexity recapitulates the biphasic role of cell adhesion in cancer cell migration: ECM sensing, remodeling and forces at the leading edge of cancer invasion". - María Anguiano; Xabier Morales; Carlos Castilla; Alejandro Rodríguez Peña; Cristina Ederra; Martin Martinez; Mikel Ariz; Maider Esparza; Hippolyte Amaveda; Mario Mora; Nieves Movilla; José Manuel García-Aznar; et al. (IEEE DataPort, 2020)

Synplex: a synthetic simulator of highly multiplexed histological images. - Daniel Jiménez Sánchez; Mikel Ariz; Carlos Ortiz-de-Solórzano (BHI, 2021)

Corrigendum to: NMF-RI: blind spectral unmixing of highly mixed multispectral flow and image cytometry data. - Daniel Jiménez Sánchez; Mikel Ariz; José Mário Morgado; Iván Cortés-Domínguez; Carlos Ortiz-de-Solórzano (Bioinform., 2022)

Biomedical image analysis competitions: The state of current participation practice. - Matthias Eisenmann; Annika Reinke; Vivienn Weru; Minu Dietlinde Tizabi; Fabian Isensee; Tim J. Adler; Patrick Godau; Veronika Cheplygina; Michal Kozubek 001; Sharib Ali; Anubha Gupta; Jan Kybic; et al. (CoRR, 2022)

NaroNet: Discovery of tumor microenvironment elements from highly multiplexed images. - Daniel Jiménez Sánchez; Mikel Ariz; Hang Chang; Xavier Matias-Guiu; Carlos E. de Andrea; Carlos Ortiz-de-Solórzano (Medical Image Anal., 2022)

Datasets used in "3-D quantification of filopodia in motile cancer cells" IEEE Transactions on Medical Imaging 38(3), 862-872 (2019). - Carlos Castilla; Martin Maska; Dmitry V. Sorokin; Erik Meijering; Carlos Ortiz-de-Solorzano (IEEE DataPort, 2022)

Weakly supervised deep learning to predict recurrence in low-grade endometrial cancer from multiplexed immunofluorescence images. - Daniel Jiménez Sánchez; Álvaro López-Janeiro; María Villalba-Esparza; Mikel Ariz; Ece Kadioglu; Ivan Masetto; Virginie Goubert; Maria D. Lozano; Ignacio Melero; David Hardisson; Carlos Ortiz-de-Solórzano; Carlos E. de Andrea (npj Digit. Medicine, 2023)

Synplex: In Silico Modeling of the Tumor Microenvironment From Multiplex Images. - Daniel Jiménez Sánchez; Mikel Ariz; Carlos E. de Andrea; Carlos Ortiz-de-Solorzano (IEEE Trans. Medical Imaging, 2023)