Volumetric constraints in 3D tomography applied to electron microscopy. - Roberto Marabini; Gabor T. Herman; Carlos Oscar Sánchez Sorzano; José María Carazo (ISBI, 2002)

3D reconstruction of 2D crystals from projections in real space. - Roberto Marabini; Gabor T. Herman; Carlos Oscar Sánchez Sorzano; José María Carazo; José-Jesús Fernández; Samuel Matej (ISBI, 2002)

Command-line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE). - Carlos Oscar Sánchez Sorzano; José María Carazo; Oswaldo Trelles (Softw. Pract. Exp., 2002)

Phan3D: design of biological phantoms in 3D electron microscopy. - Jose-Roman Bilbao-Castro; Carlos Oscar Sánchez Sorzano; Inmaculada García; José-Jesús Fernández (Bioinform., 2004)

3-D reconstruction of 2-D crystals in real space. - Roberto Marabini; Carlos Oscar Sánchez Sorzano; Samuel Matej; José-Jesús Fernández; José María Carazo; Gabor T. Herman (IEEE Trans. Image Process., 2004)

Grid Computing in 3D-EM Image Processing Using Xmipp. - Sjors H. W. Scheres; A. J. Merino; Carlos Oscar Sánchez Sorzano; José María Carazo (CBMS, 2005)

Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction. - Carlos Oscar Sánchez Sorzano; Roberto Marabini; Gabor T. Herman; José María Carazo (Pattern Recognit., 2005)

Elastic registration of biological images using vector-spline regularization. - Carlos Oscar Sánchez Sorzano; Philippe Thévenaz; Michael Unser (IEEE Trans. Biomed. Eng., 2005)

Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization. - Ignacio Arganda-Carreras; Carlos Oscar Sánchez Sorzano; Roberto Marabini; José María Carazo; Carlos Ortiz-de-Solorzano; Jan Kybic (CVAMIA, 2006)

Molecular image registration using mutual information and differential evolution optimization. - Bartosz Telenczuk; María J. Ledesma-Carbayo; Javier A. Velázquez-Muriel; Carlos Oscar Sánchez Sorzano; José María Carazo; Andrés Santos (ISBI, 2006)

Optimization problems in electron microscopy of single particles. - Carlos Oscar Sánchez Sorzano; Roberto Marabini; Alberto D. Pascual-Montano; Sjors H. W. Scheres; José María Carazo (Ann. Oper. Res., 2006)

Improved Bayesian image denoising based on wavelets with applications to electron microscopy. - Carlos Oscar Sánchez Sorzano; Elena Ortiz; Mariló López; Javier Rodrigo (Pattern Recognit., 2006)

Image processing and 3-D reconstruction in electron microscopy. - José-Jesús Fernández; Carlos Oscar Sánchez Sorzano; Roberto Marabini; José María Carazo (IEEE Signal Process. Mag., 2006)

TomoJ: tomography software for three-dimensional reconstruction in transmission electron microscopy. - Cédric Messaoudi; Thomas Boudier; Carlos Oscar Sánchez Sorzano; Sergio Marco (BMC Bioinform., 2007)

Flexible image registration for the identification of best fitted protein models in 3D-EM maps. - Laura Fernandez-de-Manuel; María J. Ledesma-Carbayo; Julian Atienza-Herrero; Carlos Oscar Sánchez Sorzano; José María Carazo; Andrés Santos (ISBI, 2008)

Volumetric restrictions in single particle 3DEM reconstruction. - Carlos Oscar Sánchez Sorzano; Javier A. Velázquez-Muriel; Roberto Marabini; Gabor T. Herman; José María Carazo (Pattern Recognit., 2008)

Marker-free image registration of electron tomography tilt-series. - Carlos Oscar Sánchez Sorzano; Cédric Messaoudi; Matthias Eibauer; Jose-Roman Bilbao-Castro; Reiner Hegerl; S. Nickell; Sergio Marco; José María Carazo (BMC Bioinform., 2009)

XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomography. - Jose-Roman Bilbao-Castro; Carlos Oscar Sánchez Sorzano; Inmaculada García; José-Jesús Fernández (Bioinform., 2010)

Image processing for Cellular tomography using soft X-rays. - Carlos Oscar Sánchez Sorzano; Joaquín Otón; Jesús Cuenca Alba; Airen Zaldívar-Perez; Gabriel Caffarena; Javier Sanchez-Jimenez; Cédric Messaoudi; Sergio Marco; Roberto Marabini; José María Carazo (ISBI, 2012)

A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs. - Vahid Abrishami; Airen Zaldívar-Peraza; José Miguel de la Rosa-Trevín; Javier Vargas 001; Joaquín Otón; Roberto Marabini; Yoel Shkolnisky; José María Carazo; Carlos Oscar Sánchez Sorzano (Bioinform., 2013)

3DEM Loupe: analysis of macromolecular dynamics using structures from electron microscopy. - Rubén Nogales-Cadenas; Slavica Jonic; Florence Tama; A. A. Arteni; Daniel Tabas-Madrid; Miguel Vázquez; Alberto D. Pascual-Montano; Carlos Oscar Sánchez Sorzano (Nucleic Acids Res., 2013)

Elastic image registration to fully explore macromolecular dynamics by electron microscopy. - Qiyu Jin; Carlos Oscar Sánchez Sorzano; Isabelle Callebaut; Florence Tama; Slavica Jonic (ICIP, 2014)

An image processing approach to the simulation of electron microscopy volumes of atomic structures. - Carlos Oscar Sánchez Sorzano; Javier Vargas 001; Joaquín Otón; Vahid Abrishami; José Miguel de la Rosa-Trevín; S. del Riego; A. Fernandez-Alderete; C. Martinez-Rey; Roberto Marabini; José María Carazo (ICIP, 2014)

2D and 3D Alignment for Electron Microscopy via Graphics Processing Units. - Eduardo Garcia de La Cueva; Miguel Mateo de La Puente; Alessandro Deideri; Ana Iriarte; Carlos Oscar Sánchez Sorzano; Gabriel Caffarena (IWBBIO, 2014)

Outlier detection for single particle analysis in Electron Microscopy. - Carlos Oscar Sánchez Sorzano; Javier Vargas 001; José Miguel de la Rosa-Trevín; Airen Zaldívar-Peraza; Joaquín Otón; Vahid Abrishami; Ignacio Foche; Roberto Marabini; Gabriel Caffarena; José María Carazo (IWBBIO, 2014)

Efficient initial volume determination from electron microscopy images of single particles. - Javier Vargas 001; Ana-Lucia Álvarez-Cabrera; Roberto Marabini; José María Carazo; Carlos Oscar Sánchez Sorzano (Bioinform., 2014)

A survey of dimensionality reduction techniques. - Carlos Oscar Sánchez Sorzano; Javier Vargas 001; Alberto Domingo Pascual-Montano (CoRR, 2014)

Comparing scientific performance among equals. - Carlos Oscar Sánchez Sorzano; Javier Vargas 001; Gabriel Caffarena-Fernández; Ana Iriarte (Scientometrics, 2014)

Iterative reconstruction for pet scanners with continuous scintillators. - Ana Iriarte; Gabriel Caffarena; Mariano Lopez-Fernandez; Rodrigo García-Carmona; Abraham Otero; Carlos Oscar Sánchez Sorzano; Roberto Marabini (EMBC, 2015)

Using neighborhood cohesiveness to infer interactions between protein domains. - Joan Segura; Carlos Oscar Sánchez Sorzano; Jesús Cuenca Alba; Patrick Aloy; José María Carazo (Bioinform., 2015)

NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning. - Javier Setoain; Mònica Franch; Marta Martínez; Daniel Tabas-Madrid; Carlos Oscar Sánchez Sorzano; Annette Bakker; Eduardo Gonzalez-Couto; Juan Elvira; Alberto D. Pascual-Montano (Nucleic Acids Res., 2015)

Undergraduate Students Compete in the IEEE Signal Processing Cup: Part 1 [sp Education]. - Kin-Man Lam 001; Carlos Oscar Sánchez Sorzano; Zhilan Zhang; Patrizio Campisi (IEEE Signal Process. Mag., 2015)

Undergraduate Students Compete in the IEEE Signal Processing Cup: Part 2 [sp Education]. - Carlos Oscar Sánchez Sorzano; Anik Khan; Forsad Al Hossain; Tawab Ullash; Abu Raihan; Mohammed Ariful Haque; Kai-Wen Liang; Yen-Chen Wu; Guan-Lin Chao; Kuan-Hao Huang; Shao-Hua Sun; Ming-Jen Yang; et al. (IEEE Signal Process. Mag., 2015)

System models for PET statistical iterative reconstruction: A review. - Ana Iriarte; Roberto Marabini; Samuel Matej; Carlos Oscar Sánchez Sorzano; Robert M. Lewitt (Comput. Medical Imaging Graph., 2016)

Coarse-Graining of Volumes for Modeling of Structure and Dynamics in Electron Microscopy: Algorithm to Automatically Control Accuracy of Approximation. - Slavica Jonic; Carlos Oscar Sánchez Sorzano (IEEE J. Sel. Top. Signal Process., 2016)

Introduction to the Issue on Advanced Signal Processing in Microscopy and Cell Imaging. - Charles Kervrann; Scott T. Acton; Jean-Christophe Olivo-Marin; Carlos Oscar Sánchez Sorzano; Michael Unser (IEEE J. Sel. Top. Signal Process., 2016)

A Guided Tour of Selected Image Processing and Analysis Methods for Fluorescence and Electron Microscopy. - Charles Kervrann; Carlos Oscar Sánchez Sorzano; Scott T. Acton; Jean-Christophe Olivo-Marin; Michael Unser (IEEE J. Sel. Top. Signal Process., 2016)

3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures. - Joan Segura; Rubén Sánchez García; Marta Martínez; Jesús Cuenca Alba; Daniel Tabas-Madrid; Carlos Oscar Sánchez Sorzano; José María Carazo (Bioinform., 2017)

Challenges ahead Electron Microscopy for Structural Biology from the Image Processing point of view. - Carlos Oscar Sánchez Sorzano; José María Carazo (CoRR, 2017)

Reconstruction From Multiple Particles for 3D Isotropic Resolution in Fluorescence Microscopy. - Denis Fortun; Paul Guichard; Virginie Hamel; Carlos Oscar Sánchez Sorzano; Niccolo Banterle; Pierre Gonczy; Michael Unser (IEEE Trans. Medical Imaging, 2018)

BIPSPI: a method for the prediction of partner-specific protein-protein interfaces. - Rubén Sánchez García; Carlos Oscar Sánchez Sorzano; José María Carazo; Joan Segura (Bioinform., 2019)

Validation of electron microscopy initial models via small angle X-ray scattering curves. - Amaya Jiménez; Slavica Jonic; Tomás Majtner; Joaquín Otón; Jose Luis Vilas; David Maluenda; Javier Mota; Erney Ramírez-Aportela; Marta Martínez; Yaiza Rancel; Joan Segura; Rubén Sánchez García; et al. (Bioinform., 2019)

3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations. - Joan Segura; Rubén Sánchez García; Carlos Oscar Sánchez Sorzano; José María Carazo (Bioinform., 2019)

A GPU acceleration of 3-D Fourier reconstruction in cryo-EM. - David Strelák; Carlos Oscar Sánchez Sorzano; José María Carazo; Jiri Filipovic (Int. J. High Perform. Comput. Appl., 2019)

Automatic local resolution-based sharpening of cryo-EM maps. - Erney Ramírez-Aportela; Jose Luis Vilas; Alisa Glukhova; Roberto Melero; Pablo Conesa; Marta Martínez; David Maluenda; Javier Mota; Amaya Jiménez; Javier Vargas 001; Roberto Marabini; Patrick M. Sexton; et al. (Bioinform., 2020)

Integration of Cryo-EM Model Building Software in Scipion. - Marta Martínez; A. Jiménez-Moreno; David Maluenda; Erney Ramírez-Aportela; Roberto Melero; Ana Cuervo; Pablo Conesa; Laura del Cano; Y. C. Fonseca; Rubén Sánchez García; David Strelák; J. J. Conesa; et al. (J. Chem. Inf. Model., 2020)

3DBionotes COVID-19 edition. - José Ramón Macías; Rubén Sánchez García; Pablo Conesa; Erney Ramírez-Aportela; Marta Martínez; Carlos Wert-Carvajal; Alberto M. Parra-Perez; Joan Segura Mora; Sam Horrell; Andrea Thorn; Carlos Oscar Sánchez Sorzano; José María Carazo (Bioinform., 2021)

PDBe-KB: collaboratively defining the biological context of structural data. - Mihaly Varadi; Stephen Anyango; David R. Armstrong; John M. Berrisford; Preeti Choudhary; Mandar S. Deshpande; Nurul Nadzirin; Sreenath Nair; Lukás Pravda; Ahsan Tanweer; Bissan Al-Lazikani; Claudia Andreini; et al. (Nucleic Acids Res., 2022)

Fast Global Image Alignment Algorithm for CryoEM through Vector Compression. - Oier Lauzirika Zarrabeitia; E. Ramírez-Aportela; José María Carazo; Carlos Oscar Sánchez Sorzano (ISBI, 2024)