MultiDataSet: an R package for encapsulating multiple data sets with application to omic data integration. - Carles Hernandez-Ferrer; Carlos Ruiz-Arenas; Alba Beltran-Gomila; Juan R. González (BMC Bioinform., 2017)

Redundancy analysis allows improved detection of methylation changes in large genomic regions. - Carlos Ruiz-Arenas; Juan R. González (BMC Bioinform., 2017)

Interpretable Causal Representation Learning for Biological Data in the Pathway Space. - Jesus de la Fuente Cedeño; Robert Lehmann 002; Carlos Ruiz-Arenas; Jan Voges; Irene Marín-Goñi; Xabier Martinez de Morentin; David Gomez-Cabrero; Idoia Ochoa; Jesper Tegnér; Vincenzo Lagani; Mikel Hernaez (ICLR, 2025)