Visual Detection with Context for Document Layout Analysis. - Carlos Soto 003; Shinjae Yoo (EMNLP/IJCNLP (1), 2019)

Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19. - Atanu Acharya; Rupesh Agarwal; Matthew B. Baker; Jérôme Baudry; Debsindhu Bhowmik; Swen Böhm; Kendall G. Byler; Sam Yen-Chi Chen; Leighton Coates; Connor J. Cooper; Omar Demerdash; Isabella Daidone; et al. (J. Chem. Inf. Model., 2020)

Extracting Protein-Protein Interactions (PPIs) from Biomedical Literature using Attention-based Relational Context Information. - Gilchan Park; Sean McCorkle; Carlos Soto 003; Ian Blaby; Shinjae Yoo (IEEE Big Data, 2022)

COMPOFF: A Compiler Cost model using Machine Learning to predict the Cost of OpenMP Offloading. - Alok Mishra 002; Smeet Chheda; Carlos Soto 003; Abid Muslim Malik; Meifeng Lin; Barbara M. Chapman (IPDPS Workshops, 2022)

An extensible point-based method for data chart value detection. - Carlos Soto 003; Shinjae Yoo (CoRR, 2023)

Virtual Scientific Companion for Synchrotron Beamlines: A Prototype. - Daniel Potemkin; Carlos Soto 003; Ruipeng Li; Kevin G. Yager; Esther H. R. Tsai (CoRR, 2023)

Leveraging LLMs and Web-based Visualizations for Profiling Bacterial Host Organisms and Genetic Toolboxes. - Gilchan Park; Vivek Mutalik; Christopher Neely; Carlos Soto 003; Shinjae Yoo; Paramvir Dehal (BioNLP@ACL, 2024)