Bioinformatic approaches for functional annotation and pathway inference in metagenomics data. - Carlotta De Filippo; Matteo Ramazzotti; Paolo Fontana; Duccio Cavalieri (Briefings Bioinform., 2012)

Explaining Diversity in Metagenomic Datasets by Phylogenetic-Based Feature Weighting. - Davide Albanese; Carlotta De Filippo; Duccio Cavalieri; Claudio Donati (PLoS Comput. Biol., 2015)

ONS Modeling of Diet Concepts: Further Development Required by the Objective Definition of "Western Diet". - Ana Reis-Costa; Francesco Vitali; Agnese Gori; Giovanni Bacci 002; Carlotta De Filippo; Duccio Cavalieri (JOWO, 2021)