Providing Application Services for Small Businesses. - Carol Lushbough (FECS, 2006)

Creating Bioinformatic Workflows within the BioExtract Server. - Carol Lushbough; Michael K. Bergman; Carolyn J. Lawrence; Douglas M. Jennewein; Volker Brendel (BIOCOMP, 2007)

An Overview of the BioExtract Server - a Distributed, Web Based Application for Bioinformatic Analysis. - Carol Lushbough; Volker Brendel (BIOCOMP, 2008)

TableMaker: An ad hoc Query Tool for Relational Databases. - Carol Lushbough; Jon Duvick; Qunfeng Dong; Douglas M. Jennewein; Joe Reynoldson; Volker Brendel (BIOCOMP, 2008)

Implementing bioinformatic workflows within the BioExtract Server. - Carol Lushbough; Michael K. Bergman; Carolyn J. Lawrence; Douglas M. Jennewein; Volker Brendel (Int. J. Comput. Biol. Drug Des., 2008)

PlantGDB: a resource for comparative plant genomics. - Jon Duvick; Ann Fu; Usha Muppirala; Mukul Sabharwal; Matthew D. Wilkerson; Carolyn J. Lawrence; Carol Lushbough; Volker Brendel (Nucleic Acids Res., 2008)

BioExtract Server - An Integrated Workflow-Enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular Data. - Carol Lushbough; Michael K. Bergman; Carolyn J. Lawrence; Douglas M. Jennewein; Volker Brendel (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

The BioExtract Server: a web-based bioinformatic workflow platform. - Carol Lushbough; Douglas M. Jennewein; Volker Brendel (Nucleic Acids Res., 2011)

BioExtract Server, a Web-based workflow enabling system, leveraging iPlant collaborative resources. - Carol Lushbough; Etienne Z. Gnimpieba; Rion Dooley (CLUSTER, 2013)

Building an open Genome Wide Association Study (GWAS) platform. - Liya Wang; Doreen Ware; Nirav C. Merchant; Carol Lushbough (CLUSTER, 2013)

Bioinformatics Knowledge Transmission (training, learning, and teaching): overview and flexible comparison of computer based training approaches. - Etienne Z. Gnimpieba; Douglas M. Jennewein; Luke Fuhrman; Carol Lushbough (CoRR, 2013)

RNA-seq gene and transcript expression analysis using the BioExtract server and iPlant collaborative. - Etienne Z. Gnimpieba; Abalo Chango; Carol M. Lushbough (BCB, 2014)

Heuristic parallelizable algorithm for similarity based biosystems comparison. - Mathialakan Thavappiragasam; Carol M. Lushbough; Etienne Z. Gnimpieba (BCB, 2014)

Automatic biosystems comparison using semantic and name similarity. - Mathialakan Thavappiragasam; Carol M. Lushbough; Etienne Z. Gnimpieba (BCB, 2014)

Pheno2GRN: a workflow for phenotype to gene network study and reverse engineering comparison. - Nick Weinandt; Laura M. Jackson; Etienne Z. Gnimpieba; Carol Lushbough (BCB, 2014)

SBMLDock: Docker Driven Systems Biology Tool Development and Usage. - Etienne Z. Gnimpieba; Mathialakan Thavappiragasam; Abalo Chango; Bill Conn; Carol M. Lushbough (CMSB, 2015)

Life science data analysis workflow development using the bioextract server leveraging the iPlant collaborative cyberinfrastructure. - Carol M. Lushbough; Etienne Z. Gnimpieba; Rion Dooley (Concurr. Comput. Pract. Exp., 2015)

A genome-wide association study platform built on iPlant cyber-infrastructure. - Liya Wang; Doreen Ware; Carol Lushbough; Nirav C. Merchant; Lincoln Stein (Concurr. Comput. Pract. Exp., 2015)

Bio-TDS: bioscience query tool discovery system. - Etienne Z. Gnimpieba; Menno S. VanDiermen; Shayla M. Gustafson; Bill Conn; Carol M. Lushbough (Nucleic Acids Res., 2017)

Prediction of essential genes in G20 using machine learning model. - Thierry Kongne Nembot; Ernest Basile Fotseu Fotseu; Rajesh Kumar Sani; Etienne Z. Gnimpieba; Carol Lushbough; Alain Bertrand Bomgni (BIBM, 2021)

Ten simple rules to cultivate transdisciplinary collaboration in data science. - Faryad Sahneh; Meghan A. Balk; Marina Kisley; Chi-Kwan Chan; Mercury Fox; Brian Nord; Eric Lyons 002; Tyson Lee Swetnam; Daniela Huppenkothen; Will Sutherland; Ramona L. Walls; Daven P. Quinn; et al. (PLoS Comput. Biol., 2021)

Attention model-based and multi-organism driven gene recognition from text: application to a microbial biofilm organism set. - Alain Bertrand Bomgni; Ernest Basile Fotseu Fotseu; Daril Raoul Kengne Wambo; Rajesh Kumar Sani; Carol Lushbough; Etienne Z. Gnimpieba (BIBM, 2022)

Utilizing XGBoost for the Prediction of Material Corrosion Rates from Embedded Tabular Data using Large Language Model. - Tuyen Do; Bichar Dip Shrestha Gurung; Shiva Aryal; Anup Khanal; Sandeep Chataut; Venkataramana Gadhamshetty; Carol Lushbough; Etienne Z. Gnimpieba (BIBM, 2023)

Transformer in Microbial Image Analysis: A Comparative Exploration of TransUNet, UNet, and DoubleUNet for SEM Image Segmentation. - Bichar Dip Shrestha Gurung; Anup Khanal; Timothy W. Hartman; Tuyen Do; Sandeep Chataut; Carol Lushbough; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba (BIBM, 2023)

Biofilm marker discovery with cloud-based dockerized metagenomics analysis of microbial communities. - Etienne Z. Gnimpieba; Timothy W. Hartman; Tuyen Do; Jessica Zylla; Shiva Aryal; Samuel J. Haas; Diing D. M. Agany; Bichar Dip Shrestha Gurung; Valena Doe; Zelaikha B. Yosufzai; Daniel Pan; Ross Campbell; et al. (Briefings Bioinform., 2024)

Comparative Study of Domain Driven Terms Extraction Using Large Language Models. - Sandeep Chataut; Tuyen Do; Bichar Dip Shrestha Gurung; Shiva Aryal; Anup Khanal; Carol Lushbough; Etienne Z. Gnimpieba (CoRR, 2024)