CombAlign: a code for generating a one-to-many sequence alignment from a set of pairwise structure-based sequence alignments. - Carol Zhou (Source Code Biol. Medicine, 2015)

PHANOTATE: a novel approach to gene identification in phage genomes. - Katelyn McNair; Carol Zhou; Elizabeth A. Dinsdale; Brian Souza; Robert A. Edwards (Bioinform., 2019)