MethylViewer: computational analysis and editing for bisulfite sequencing and methyltransferase accessibility protocol for individual templates (MAPit) projects. - Carolina E. Pardo; Ian M. Carr; Christopher J. Hoffman; Russell P. Darst; Alexander F. Markham; David T. Bonthron; Michael P. Kladde (Nucleic Acids Res., 2011)

Methylscaper: an R/Shiny app for joint visualization of DNA methylation and nucleosome occupancy in single-molecule and single-cell data. - Parker Knight; Marie-Pierre L. Gauthier; Carolina E. Pardo; Russell P. Darst; Kevin Kapadia; Hadley Browder; Eliza Morton; Alberto Riva; Michael P. Kladde; Rhonda Bacher (Bioinform., 2021)