Process calculi for systems biology. - Caroline Baroukh; Anthony Rowe 002; Yike Guo (BCB, 2010)

Process Calculi for Systems Biology and applications in severe asthma. - Caroline Baroukh; Anthony Rowe 002; Yike Guo (BIBM Workshops, 2010)

Genes2WordCloud: a quick way to identify biological themes from gene lists and free text. - Caroline Baroukh; Sherry L. Jenkins; Ruth Dannenfelser; Avi Ma'ayan (Source Code Biol. Medicine, 2011)

ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells. - Huilei Xu; Caroline Baroukh; Ruth Dannenfelser; Edward Y. Chen; Christopher M. Tan; Yan Kou; Yujin E. Kim; Ihor Lemischka; Avi Ma'ayan (Database J. Biol. Databases Curation, 2013)

Metabolic modeling under non-balanced growth. Application to microalgae for biofuels production. (La modélisation métabolique en croissance non équilibrée. Application à la production de biocarburants issus de microalgues). - Caroline Baroukh (2014)

Bayesian Optimization with Dimension Scheduling: Application to Biological Systems. - Doniyor Ulmasov; Caroline Baroukh; Benoît Chachuat; Marc Peter Deisenroth; Ruth Misener (CoRR, 2015)

Dynamic metabolic modeling of heterotrophic and mixotrophic microalgal growth on fermentative wastes. - Caroline Baroukh; Violette Turon; Olivier Bernard 003 (PLoS Comput. Biol., 2017)

Learning Boolean Controls in Regulated Metabolic Networks: A Case-Study. - Kerian Thuillier; Caroline Baroukh; Alexander Bockmayr; Ludovic Cottret; Loïc Paulevé; Anne Siegel (CMSB, 2021)

MERRIN: MEtabolic regulation rule INference from time series data. - Kerian Thuillier; Caroline Baroukh; Alexander Bockmayr; Ludovic Cottret; Loïc Paulevé; Anne Siegel (Bioinform., 2022)