Support vector machines for separation of mixed plant?Cpathogen EST collections based on codon usage. - Caroline C. Friedel; Katharina H. V. Jahn; Selina Sommer; Stephen Rudd; Hans-Werner Mewes; Igor V. Tetko (Bioinform., 2005)

Reliable gene signatures for microarray classification: assessment of stability and performance. - Chad A. Davis; Fabian Gerick; Volker Hintermair; Caroline C. Friedel; Katrin Fundel; Robert Küffner; Ralf Zimmer (Bioinform., 2006)

Inferring topology from clustering coefficients in protein-protein interaction networks. - Caroline C. Friedel; Ralf Zimmer (BMC Bioinform., 2006)

Influence of degree correlations on network structure and stability in protein-protein interaction networks. - Caroline C. Friedel; Ralf Zimmer (BMC Bioinform., 2007)

Analysis of high throughput data - protein protein interactions, protein complexes and RNA half life. - Caroline Christina Friedel (2008)

ProCope - protein complex prediction and evaluation. - Jan Krumsiek; Caroline C. Friedel; Ralf Zimmer (Bioinform., 2008)

FERN - a Java framework for stochastic simulation and evaluation of reaction networks. - Florian Erhard; Caroline C. Friedel; Ralf Zimmer (BMC Bioinform., 2008)

Analysis of High-Throughput Data - Protein-Protein Interactions, Protein Complexes and RNA Half-life. - Caroline C. Friedel (Ausgezeichnete Informatikdissertationen, 2009)

Identifying the topology of protein complexes from affinity purification assays. - Caroline C. Friedel; Ralf Zimmer (Bioinform., 2009)

Algorithmische Systembiologie mit Petrinetzen - Von qualitativen zu quantitativen Systemmodellen. - Fabian Birzele; Gergely Csaba; Florian Erhard; Caroline C. Friedel; Robert Küffner; Tobias Petri; Lukas Windhager; Ralf Zimmer (Inform. Spektrum, 2009)

Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast. - Caroline C. Friedel; Jan Krumsiek; Ralf Zimmer (J. Comput. Biol., 2009)

HALO - a Java framework for precise transcript half-life determination. - Caroline C. Friedel; Stefanie Kaufmann; Lars Dölken; Ralf Zimmer (Bioinform., 2010)

A context-based approach to identify the most likely mapping for RNA-seq experiments. - Thomas Bonfert; Gergely Csaba; Ralf Zimmer; Caroline C. Friedel (BMC Bioinform., 2012)

Detection and correction of probe-level artefacts on microarrays. - Tobias Petri; Evi Berchtold; Ralf Zimmer; Caroline C. Friedel (BMC Bioinform., 2012)

ContextMap 2: fast and accurate context-based RNA-seq mapping. - Thomas Bonfert; Evelyn Kirner; Gergely Csaba; Ralf Zimmer; Caroline C. Friedel (BMC Bioinform., 2015)

Bioinformatics Advances Biology and Medicine by Turning Big Data Troves into Knowledge. - Julien Gagneur; Caroline C. Friedel; Volker Heun; Ralf Zimmer; Burkhard Rost (50 Jahre Universitäts-Informatik in München, 2017)

Bioinformatics advances biology and medicine by turning big data troves into knowledge. - Julien Gagneur; Caroline C. Friedel; Volker Heun; Ralf Zimmer; Burkhard Rost (Inform. Spektrum, 2017)

Watchdog - a workflow management system for the distributed analysis of large-scale experimental data. - Michael Kluge; Caroline C. Friedel (BMC Bioinform., 2018)