Principle Angle Enrichment Analysis (PAEA): Dimensionally reduced multivariate gene set enrichment analysis tool. - Neil R. Clark; Maciej Szymkiewicz; Zichen Wang 002; Caroline D. Monteiro; Matthew R. Jones; Avi Ma'ayan (BIBM, 2015)

GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions. - Gregory W. Gundersen; Matthew R. Jones; Andrew D. Rouillard; Yan Kou; Caroline D. Monteiro; Axel S. Feldmann; Kevin S. Hu; Avi Ma'ayan (Bioinform., 2015)

The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins. - Andrew D. Rouillard; Gregory W. Gundersen; Nicolas F. Fernandez; Zichen Wang 002; Caroline D. Monteiro; Michael G. McDermott; Avi Ma'ayan (Database J. Biol. Databases Curation, 2016)

GEN3VA: aggregation and analysis of gene expression signatures from related studies. - Gregory W. Gundersen; Kathleen M. Jagodnik; Holly Woodland; Nicolas F. Fernandez; Kevin Sani; Anders B. Dohlman; Peter Man-Un Ung; Caroline D. Monteiro; Avner Schlessinger; Avi Ma'ayan (BMC Bioinform., 2016)

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update. - Maxim V. Kuleshov; Matthew R. Jones; Andrew D. Rouillard; Nicolas F. Fernandez; Qiaonan Duan; Zichen Wang 002; Simon Koplev; Sherry L. Jenkins; Kathleen M. Jagodnik; Alexander Lachmann; Michael G. McDermott; Caroline D. Monteiro; et al. (Nucleic Acids Res., 2016)