Discovering Protein Function Classification Rules from Reduced Alphabet Representations of Protein Sequences. - Carson M. Andorf; Drena Dobbs; Vasant G. Honavar (JCIS, 2002)

Information Integration from Semantically Heterogeneous Biological Data Sources. - Doina Caragea; Jie Bao 001; Jyotishman Pathak; Adrian Silvescu; Carson M. Andorf; Drena Dobbs; Vasant G. Honavar (DEXA Workshops, 2005)

Information Integration and Knowledge Acquisition from Semantically Heterogeneous Biological Data Sources. - Doina Caragea; Jyotishman Pathak; Jie Bao 001; Adrian Silvescu; Carson M. Andorf; Drena Dobbs; Vasant G. Honavar (DILS, 2005)

Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach. - Carson M. Andorf; Drena Dobbs; Vasant G. Honavar (BMC Bioinform., 2007)

MaizeGDB becomes 'sequence-centric'. - Taner Z. Sen; Carson M. Andorf; Mary L. Schaeffer; Lisa C. Harper; Michael E. Sparks; Jon Duvick; Volker P. Brendel; Ethalinda K. S. Cannon; Darwin A. Campbell; Carolyn J. Lawrence (Database J. Biol. Databases Curation, 2009)

Choosing a genome browser for a Model Organism Database: surveying the Maize community. - Taner Z. Sen; Lisa C. Harper; Mary L. Schaeffer; Carson M. Andorf; Trent E. Seigfried; Darwin A. Campbell; Carolyn J. Lawrence (Database J. Biol. Databases Curation, 2010)

The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps. - Carson M. Andorf; Carolyn J. Lawrence; Lisa C. Harper; Mary L. Schaeffer; Darwin A. Campbell; Taner Z. Sen (Bioinform., 2010)

The MaizeGDB Genome Browser tutorial: one example of database outreach to biologists via video. - Lisa C. Harper; Mary L. Schaeffer; Jordan Thistle; Jack M. Gardiner; Carson M. Andorf; Darwin A. Campbell; Ethalinda K. S. Cannon; Bremen L. Braun; Scott M. Birkett; Carolyn J. Lawrence; Taner Z. Sen (Database J. Biol. Databases Curation, 2011)

MaizeGDB: curation and outreach go hand-in-hand. - Mary L. Schaeffer; Lisa C. Harper; Jack M. Gardiner; Carson M. Andorf; Darwin A. Campbell; Ethalinda K. S. Cannon; Taner Z. Sen; Carolyn J. Lawrence (Database J. Biol. Databases Curation, 2011)

MaizeGDB update: new tools, data and interface for the maize model organism database. - Carson M. Andorf; Ethalinda K. S. Cannon; John L. Portwood II; Jack M. Gardiner; Lisa C. Harper; Mary L. Schaeffer; Bremen L. Braun; Darwin A. Campbell; Abhinav G. Vinnakota; Venktanaga V. Sribalusu; Miranda Huerta; Kyoung Tak Cho; et al. (Nucleic Acids Res., 2016)

Surveying the Maize community for their diversity and pedigree visualization needs to prioritize tool development and curation. - Taner Z. Sen; Bremen L. Braun; David A. Schott; John L. Portwood II; Mary L. Schaeffer; Lisa C. Harper; Jack M. Gardiner; Ethalinda K. S. Cannon; Carson M. Andorf (Database J. Biol. Databases Curation, 2017)

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. - Lisa C. Harper; Jacqueline D. Campbell; Ethalinda K. S. Cannon; Sook Jung; Monica Poelchau; Ramona L. Walls; Carson M. Andorf; Elizabeth Arnaud; Tanya Z. Berardini; Clayton L. Birkett; Steven B. Cannon; James D. Carson; et al. (Database J. Biol. Databases Curation, 2018)

SNPversity: a web-based tool for visualizing diversity. - David A. Schott; Abhinav G. Vinnakota; John L. Portwood II; Carson M. Andorf; Taner Z. Sen (Database J. Biol. Databases Curation, 2018)

Crowdsourcing image analysis for plant phenomics to generate ground truth data for machine learning. - Naihui Zhou; Zachary D. Siegel; Scott Zarecor; Nigel Lee; Darwin A. Campbell; Carson M. Andorf; Dan Nettleton; Carolyn J. Lawrence-Dill; Baskar Ganapathysubramanian; Jonathan W. Kelly; Iddo Friedberg (PLoS Comput. Biol., 2018)

PedigreeNet: a web-based pedigree viewer for biological databases. - Bremen L. Braun; David A. Schott; John L. Portwood II; Carson M. Andorf; Taner Z. Sen (Bioinform., 2019)

MaizeGDB 2018: the maize multi-genome genetics and genomics database. - John L. Portwood II; Margaret Woodhouse; Ethalinda K. S. Cannon; Jack M. Gardiner; Lisa C. Harper; Mary L. Schaeffer; Jesse R. Walsh; Taner Z. Sen; Kyoung Tak Cho; David A. Schott; Bremen L. Braun; Miranda Dietze; et al. (Nucleic Acids Res., 2019)

FINDER: A fully automated pipeline to FIND accurate gene structures from proteins and RNA-Seq expression data. - Sagnik Banerjee; Margaret Woodhouse; Roger P. Wise; Priyanka Bhandary; Taner Z. Sen; Carson M. Andorf (BCB, 2020)

qTeller: a tool for comparative multi-genomic gene expression analysis. - Margaret Woodhouse; Shatabdi Sen; David A. Schott; John L. Portwood II; Michael Freeling; Justin W. Walley; Carson M. Andorf; James C. Schnable (Bioinform., 2021)

FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences. - Sagnik Banerjee; Priyanka Bhandary; Margaret Woodhouse; Taner Z. Sen; Roger P. Wise; Carson M. Andorf (BMC Bioinform., 2021)

Predicting Tissue-Specific mRNA and Protein Abundance in Maize: A Machine Learning Approach. - Kyoung Tak Cho; Taner Z. Sen; Carson M. Andorf (Frontiers Artif. Intell., 2022)

Maize Feature Store: A centralized resource to manage and analyze curated maize multi-omics features for machine learning applications. - Shatabdi Sen; Margaret Woodhouse; John L. Portwood II; Carson M. Andorf (Database J. Biol. Databases Curation, 2023)

PanEffect: a pan-genome visualization tool for variant effects in maize. - Carson M. Andorf; Olivia C. Haley; Rita K. Hayford; John L. Portwood II; Stephen Harding; Shatabdi Sen; Ethalinda K. S. Cannon; Jack M. Gardiner; Hye-Seon Kim; Margaret Woodhouse (Bioinform., 2024)

Assessing the performance of generative artificial intelligence in retrieving information against manually curated genetic and genomic data. - Elly Poretsky; Victoria C. Blake; Carson M. Andorf; Taner Z. Sen (Database J. Biol. Databases Curation, 2025)