Upcoming challenges for multiple sequence alignment methods in the high-throughput era. - Carsten Kemena; Cédric Notredame (Bioinform., 2009)

STRIKE: evaluation of protein MSAs using a single 3D structure. - Carsten Kemena; Jean-François Taly; Jens Kleinjung; Cédric Notredame (Bioinform., 2011)

Enhancing the Scalability of Consistency-based Progressive Multiple Sequences Alignment Applications. - Miquel Orobitg; Fernando Cores; Fernando Guirado; Carsten Kemena; Cédric Notredame; Ana Ripoll (IPDPS, 2012)

Epistasis as the primary factor in molecular evolution. - Michael S. Breen; Carsten Kemena; Peter K. Vlasov; Cédric Notredame; Fyodor A. Kondrashov (Nat., 2012)

Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package. - Carsten Kemena; Giovanni Bussotti; Emidio Capriotti; Marc A. Martí-Renom; Cédric Notredame (Bioinform., 2013)

SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments. - Paolo Di Tommaso; Giovanni Bussotti; Carsten Kemena; Emidio Capriotti; Maria Chatzou; Pablo Prieto; Cédric Notredame (Nucleic Acids Res., 2014)

Domain similarity based orthology detection. - Tristan Bitard-Feildel; Carsten Kemena; Jenny M. Greenwood; Erich Bornberg-Bauer (BMC Bioinform., 2015)

MDAT- Aligning multiple domain arrangements. - Carsten Kemena; Tristan Feildel; Erich Bornberg-Bauer (BMC Bioinform., 2015)

Multiple sequence alignment modeling: methods and applications. - Maria Chatzou; Cedrik Magis; Jia-Ming Chang; Carsten Kemena; Giovanni Bussotti; Ionas Erb; Cédric Notredame (Briefings Bioinform., 2016)

DOGMA: domain-based transcriptome and proteome quality assessment. - Elias Dohmen; Lukas P. M. Kremer; Erich Bornberg-Bauer; Carsten Kemena (Bioinform., 2016)

DOGMA: a web server for proteome and transcriptome quality assessment. - Carsten Kemena; Elias Dohmen; Erich Bornberg-Bauer (Nucleic Acids Res., 2019)