Extended Lifetime In Vivo Pulse Stimulated Ultrasound Imaging. - James Wang; Christopher V. Barback; Casey N. Ta; Joi Weeks; Natalie Gude; Robert F. Mattrey; Sarah L. Blair; William C. Trogler; Hotaik Lee; Andrew C. Kummel (IEEE Trans. Medical Imaging, 2018)

Combining Clinical Data and Domain Knowledge for Analyzing Mental Disorder Concept Relatedness and Usage. - Duo Helen Wei; Casey N. Ta; Harold Alan Pincus; Chunhua Weng (ICHI, 2019)

Detecting Systemic Data Quality Issues in Electronic Health Records. - Casey N. Ta; Chunhua Weng (MedInfo, 2019)

DQueST: dynamic questionnaire for search of clinical trials. - Cong Liu 020; Chi Yuan; Alex M. Butler; Richard D. Carvajal; Ziran Ryan Li; Casey N. Ta; Chunhua Weng (J. Am. Medical Informatics Assoc., 2019)

Criteria2Query: a natural language interface to clinical databases for cohort definition. - Chi Yuan; Patrick B. Ryan; Casey N. Ta; Yixuan Guo; Ziran Li; Jill Hardin; Rupa Makadia; Peng Jin; Ning Shang; Tian Kang; Chunhua Weng (J. Am. Medical Informatics Assoc., 2019)

Sex, obesity, diabetes, and exposure to particulate matter among patients with severe asthma: Scientific insights from a comparative analysis of open clinical data sources during a five-day hackathon. - Karamarie Fecho; Stanley C. Ahalt; Saravanan Arunachalam; James Champion; Christopher G. Chute; Sarah Davis; Kenneth Gersing; Gustavo Glusman; Jennifer Hadlock; Jewel Lee; Emily R. Pfaff; Max Robinson; et al. (J. Biomed. Informatics, 2019)

Ensembles of natural language processing systems for portable phenotyping solutions. - Cong Liu 020; Casey N. Ta; James R. Rogers; Ziran Li; Junghwan Lee; Alex M. Butler; Ning Shang; Fabricio Sampaio Peres Kury; Liwei Wang 010; Feichen Shen; Hongfang Liu; Lyudmila Ena; et al. (J. Biomed. Informatics, 2019)

Making work visible for electronic phenotype implementation: Lessons learned from the eMERGE network. - Ning Shang; Cong Liu 020; Luke V. Rasmussen; Casey N. Ta; Robert J. Carroll; Barbara Benoit; Todd Lingren; Ozan Dikilitas; Frank D. Mentch; David S. Carrell; Wei-Qi Wei; Yuan Luo 001; et al. (J. Biomed. Informatics, 2019)

Doc2Hpo: a web application for efficient and accurate HPO concept curation. - Cong Liu 020; Fabricio Sampaio Peres Kury; Ziran Li; Casey N. Ta; Kai Wang 049; Chunhua Weng (Nucleic Acids Res., 2019)

Towards Better Diagnosis Prediction Using Bidirectional Recurrent Neural Networks. - Junghwan Lee; Cong Liu 020; Casey N. Ta; Chunhua Weng (MedInfo, 2021)

Evaluation of Criteria2Query: Towards Augmented Intelligence for Cohort Identification. - Cong Liu 020; Hao Liu 054; Casey N. Ta; James Roger; Alex Butler; Junghwan Lee; Jaehyun Kim; Ning Shang; Chunhua Weng (MedInfo, 2021)

A Framework for Systematic Assessment of Clinical Trial Population Representativeness Using Electronic Health Records Data. - Yingcheng Sun; Alex M. Butler; Ibrahim Diallo; Jae Hyun Kim; Casey N. Ta; James R. Rogers; Hao Liu 054; Chunhua Weng (Appl. Clin. Inform., 2021)

The potential role of EHR data in optimizing eligibility criteria definition for cardiovascular outcome trials. - Jae Hyun Kim; Alex M. Butler; Casey N. Ta; Yingcheng Sun; Mathew S. Maurer; Chunhua Weng (Int. J. Medical Informatics, 2021)

UMLS-based data augmentation for natural language processing of clinical research literature. - Tian Kang; Adler J. Perotte; Youlan Tang; Casey N. Ta; Chunhua Weng (J. Am. Medical Informatics Assoc., 2021)

Towards clinical data-driven eligibility criteria optimization for interventional COVID-19 clinical trials. - Jae Hyun Kim; Casey N. Ta; Cong Liu 020; Cynthia Sung 002; Alex M. Butler; Latoya A. Stewart; Lyudmila Ena; James R. Rogers; Junghwan Lee; Anna Ostropolets; Patrick B. Ryan; Hao Liu 054; et al. (J. Am. Medical Informatics Assoc., 2021)

From clinical trials to clinical practice: How long are drugs tested and then used by patients? - Chi Yuan; Patrick B. Ryan; Casey N. Ta; Jae Hyun Kim; Ziran Li; Chunhua Weng (J. Am. Medical Informatics Assoc., 2021)

Leveraging electronic health record data for clinical trial planning by assessing eligibility criteria's impact on patient count and safety. - James R. Rogers; Jovana Pavisic; Casey N. Ta; Cong Liu 020; Ali Soroush; Ying Kuen Cheung; George Hripcsak; Chunhua Weng (J. Biomed. Informatics, 2022)

EvidenceMap: a three-level knowledge representation for medical evidence computation and comprehension. - Tian Kang; Yingcheng Sun; Jae Hyun Kim; Casey N. Ta; Adler J. Perotte; Kayla Schiffer; Mutong Wu; Yang Zhao; Nour Moustafa-Fahmy; Yifan Peng 002; Chunhua Weng (J. Am. Medical Informatics Assoc., 2023)

Clinical and temporal characterization of COVID-19 subgroups using patient vector embeddings of electronic health records. - Casey N. Ta; Jason E. Zucker; Po-Hsiang Chiu; Yilu Fang; Karthik Natarajan; Chunhua Weng (J. Am. Medical Informatics Assoc., 2023)

A data-driven approach to optimizing clinical study eligibility criteria. - Yilu Fang; Hao Liu 054; Betina Ross S. Idnay; Casey N. Ta; Karen Marder; Chunhua Weng (J. Biomed. Informatics, 2023)

Criteria2Query 3.0: Leveraging generative large language models for clinical trial eligibility query generation. - Jimyung Park; Yilu Fang; Casey N. Ta; Gongbo Zhang; Betina Idnay; Fangyi Chen; David Feng; Rebecca Shyu; Emily R. Gordon; Matthew E. Spotnitz; Chunhua Weng (J. Biomed. Informatics, 2024)

Converting OMOP CDM to phenopackets: A model alignment and patient data representation evaluation. - Kayla Schiffer-Kane; Cong Liu 020; Tiffany J. Callahan; Casey N. Ta; Jordan G. Nestor; Chunhua Weng (J. Biomed. Informatics, 2024)

Phenotype driven molecular genetic test recommendation for diagnosing pediatric rare disorders. - Fangyi Chen; Priyanka Ahimaz; Quan M. Nguyen; Rachel Lewis; Wendy K. Chung; Casey N. Ta; Katherine M. Szigety; Sarah E. Sheppard; Ian M. Campbell; Kai Wang 049; Chunhua Weng; Cong Liu 020 (npj Digit. Medicine, 2024)

Mini-mental status examination phenotyping for Alzheimer's disease patients using both structured and narrative electronic health record features. - Betina Idnay; Gongbo Zhang; Fangyi Chen; Casey N. Ta; Matthew W. Schelke; Karen Marder; Chunhua Weng (J. Am. Medical Informatics Assoc., 2025)

Scalable Scientific Interest Profiling Using Large Language Models. - Yilun Liang; Gongbo Zhang; Edward Sun; Betina Idnay; Yilu Fang; Fangyi Chen; Casey N. Ta; Yifan Peng 002; Chunhua Weng (CoRR, 2025)