A Nonparametric Multi-view Model for Estimating Cell Type-Specific Gene Regulatory Networks. - Cassandra Burdziak; Elham Azizi; Sandhya Prabhakaran; Dana Pe'er (CoRR, 2019)

scKINETICS: inference of regulatory velocity with single-cell transcriptomics data. - Cassandra Burdziak; Chujun Julia Zhao; Doron Haviv; Direna Alonso-Curbelo; Scott W. Lowe; Dana Pe'er (Bioinform., 2023)

Wasserstein Wormhole: Scalable Optimal Transport Distance with Transformer. - Doron Haviv; Russell Zhang Kunes; Thomas Dougherty; Cassandra Burdziak; Tal Nawy; Anna Gilbert; Dana Pe'er (ICML, 2024)

Wasserstein Wormhole: Scalable Optimal Transport Distance with Transformers. - Doron Haviv; Russell Zhang Kunes; Thomas Dougherty; Cassandra Burdziak; Tal Nawy; Anna Gilbert; Dana Pe'er (CoRR, 2024)