BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. - Catalina A. Vallejos; John C. Marioni; Sylvia Richardson (PLoS Comput. Biol., 2015)

Design choices for productive, secure, data-intensive research at scale in the cloud. - Diego Arenas; Jon Atkins; Clare Austin; David Beavan; Alvaro Cabrejas Egea; Stephen Carlysle-Davies; Ian Carter; Rob Clarke; James Cunningham; Tom Doel; Oliver Forrest; Evelina Gabasova; et al. (CoRR, 2019)

12 Grand Challenges in Single-Cell Data Science. - David Laehnemann; Johannes Köster; Ewa Szczurek; Davis J. McCarthy; Stephanie C. Hicks; Mark D. Robinson; Catalina A. Vallejos; Niko Beerenwinkel; Kieran R. Campbell; Ahmed Mahfouz; Luca Pinello; Pavel Skums; et al. (PeerJ Prepr., 2019)

Model updating after interventions paradoxically introduces bias. - James Liley; Samuel R. Emerson; Bilal A. Mateen; Catalina A. Vallejos; Louis J. M. Aslett; Sebastian J. Vollmer (AISTATS, 2021)

SCRaPL: A Bayesian hierarchical framework for detecting technical associates in single cell multiomics data. - Christos Maniatis; Catalina A. Vallejos; Guido Sanguinetti (PLoS Comput. Biol., 2022)

AMUSE: Adaptive Model Updating using a Simulated Environment. - Louis Chislett; Catalina A. Vallejos; Timothy I. Cannings; James Liley (CoRR, 2024)

Publisher Correction: Development and assessment of a machine learning tool for predicting emergency admission in Scotland. - James Liley; Gergo Bohner; Samuel R. Emerson; Bilal A. Mateen; Katie Borland; David Carr; Scott Heald; Samuel D. Oduro; Jill Ireland; Keith Moffat; Rachel Porteous; Stephen Riddell; et al. (npj Digit. Medicine, 2024)

Development and assessment of a machine learning tool for predicting emergency admission in Scotland. - James Liley; Gergo Bohner; Samuel R. Emerson; Bilal A. Mateen; Katie Borland; David Carr; Scott Heald; Samuel D. Oduro; Jill Ireland; Keith Moffat; Rachel Porteous; Stephen Riddell; et al. (npj Digit. Medicine, 2024)

Ethical considerations of use of hold-out sets in clinical prediction model management. - Louis Chislett; Louis J. M. Aslett; Alisha R. Davies; Catalina A. Vallejos; James Liley (AI Ethics, 2025)

The C-index Multiverse. - Begoña B. Sierra; Colin McLean; Peter S. Hall 002; Catalina A. Vallejos (CoRR, 2025)