On the Impact of Entropy Estimation on Transcriptional Regulatory Network Inference Based on Mutual Information. - Catharina Olsen; Patrick E. Meyer 001; Gianluca Bontempi (EURASIP J. Bioinform. Syst. Biol., 2009)

Fourier spectral factor model for prediction of multidimensional signals. - Abhilash Alexander Miranda; Catharina Olsen; Gianluca Bontempi (Signal Process., 2011)

Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks. - Benjamin Haibe-Kains; Catharina Olsen; Amira Djebbari; Gianluca Bontempi; Mick Correll; Christopher Bouton; John Quackenbush (Nucleic Acids Res., 2012)

mRMRe: an R package for parallelized mRMR ensemble feature selection. - Nicolas De Jay; Simon Papillon-Cavanagh; Catharina Olsen; Nehme Hachem; Gianluca Bontempi; Benjamin Haibe-Kains (Bioinform., 2013)

Research and applications: Comparison and validation of genomic predictors for anticancer drug sensitivity. - Simon Papillon-Cavanagh; Nicolas De Jay; Nehme Hachem; Catharina Olsen; Gianluca Bontempi; Hugo J. W. L. Aerts; John Quackenbush; Benjamin Haibe-Kains (J. Am. Medical Informatics Assoc., 2013)

NetBenchmark: a bioconductor package for reproducible benchmarks of gene regulatory network inference. - Pau Bellot; Catharina Olsen; Philippe Salembier; Albert Oliveras-Vergés; Patrick E. Meyer 001 (BMC Bioinform., 2015)

PharmacoGx: an R package for analysis of large pharmacogenomic datasets. - Petr Smirnov; Zhaleh Safikhani; Nehme Hachem; Dong Wang; Adrian She; Catharina Olsen; Mark Freeman 002; Heather Marie Selby; Deena M. A. Gendoo; Patrick Grossmann; Andrew H. Beck; Hugo J. W. L. Aerts; et al. (Bioinform., 2016)

TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages. - Tiago Chedraoui Silva; Antonio Colaprico; Catharina Olsen; Fulvio D'Angelo; Gianluca Bontempi; Michele Ceccarelli; Houtan Noushmehr (F1000Research, 2016)

TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data. - Tiago Chedraoui Silva; Antonio Colaprico; Catharina Olsen; Tathiane M. Malta; Gianluca Bontempi; Michele Ceccarelli; Benjamin P. Berman; Houtan Noushmehr (F1000Research, 2018)

New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx. - Mohamed Mounir; Marta Lucchetta; Tiago Chedraoui Silva; Catharina Olsen; Gianluca Bontempi; Xi Chen; Houtan Noushmehr; Antonio Colaprico; Elena Papaleo (PLoS Comput. Biol., 2019)

EDIR: exome database of interspersed repeats. - Laura D. T. Vo Ngoc; Randy Osei; Katrin Dohr; Catharina Olsen; Sara Seneca; Alexander Gheldof (Bioinform., 2023)

A workflow to study mechanistic indicators for driver gene prediction with Moonlight. - Mona Nourbakhsh; Astrid Saksager; Nikola Tom; Xi Steven Chen; Antonio Colaprico; Catharina Olsen; Matteo Tiberti; Elena Papaleo (Briefings Bioinform., 2023)

Combining evolution and protein language models for an interpretable cancer driver mutation prediction with D2Deep. - Konstantina Tzavella; Adrián Díaz; Catharina Olsen; Wim F. Vranken (Briefings Bioinform., 2024)