SGD: Saccharomyces Genome Database. - J. Michael Cherry; Caroline Adler; Catherine A. Ball; Stephen A. Chervitz; Selina S. Dwight; Erich T. Hester; Yankai Jia; Gail Juvik; TaiYun Roe; Mark Schroeder; Shuai Weng; David Botstein (Nucleic Acids Res., 1998)

Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure. - Stephen A. Chervitz; Erich T. Hester; Catherine A. Ball; Kara Dolinski; Selina S. Dwight; Midori A. Harris; Gail Juvik; Alice Malekian; Shannon Roberts; TaiYun Roe; Charles R. Scafe; Mark Schroeder; et al. (Nucleic Acids Res., 1999)

Integrating functional genomic information into the Saccharomyces Genome Database. - Catherine A. Ball; Kara Dolinski; Selina S. Dwight; Midori A. Harris; Laurie Issel-Tarver; Andrew Kasarskis; Charles R. Scafe; Gavin Sherlock; Gail Binkley; Heng Jin; Miroslava Kaloper; Sidney D. Orr; et al. (Nucleic Acids Res., 2000)

Saccharomyces Genome Database provides tools to survey gene expression and functional analysis data. - Catherine A. Ball; Heng Jin; Gavin Sherlock; Shuai Weng; John C. Matese; Rey Andrada; Gail Binkley; Kara Dolinski; Selina S. Dwight; Midori A. Harris; Laurie Issel-Tarver; Mark Schroeder; et al. (Nucleic Acids Res., 2001)

The Stanford Microarray Database. - Gavin Sherlock; Tina Hernandez-Boussard; Andrew Kasarskis; Gail Binkley; John C. Matese; Selina S. Dwight; Miroslava Kaloper; Shuai Weng; Heng Jin; Catherine A. Ball; Michael B. Eisen; Paul T. Spellman; et al. (Nucleic Acids Res., 2001)

An open letter to the scientific journals. - Catherine A. Ball; Gavin Sherlock; Helen E. Parkinson; Philippe Rocca-Serra; Catherine Brooksbank; Helen C. Causton; Duccio Cavalieri; Terry Gaasterland; Pascal Hingamp; Frank C. P. Holstege; Martin Ringwald; Paul T. Spellman; et al. (Bioinform., 2002)

Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO). - Selina S. Dwight; Midori A. Harris; Kara Dolinski; Catherine A. Ball; Gail Binkley; Karen R. Christie; Dianna G. Fisk; Laurie Issel-Tarver; Mark Schroeder; Gavin Sherlock; Anand Sethuraman; Shuai Weng; et al. (Nucleic Acids Res., 2002)

The Stanford Microarray Database: data access and quality assessment tools. - Jeremy Gollub; Catherine A. Ball; Gail Binkley; Janos Demeter; David B. Finkelstein; Joan M. Hebert; Tina Hernandez-Boussard; Heng Jin; Miroslava Kaloper; John C. Matese; Mark Schroeder; Patrick O. Brown; et al. (Nucleic Acids Res., 2003)

Caryoscope: An Open Source Java application for viewing microarray data in a genomic context. - Ihab A. B. Awad; Christian A. Rees; Tina Hernandez-Boussard; Catherine A. Ball; Gavin Sherlock (BMC Bioinform., 2004)

The Stanford Microarray Database accommodates additional microarray platforms and data formats. - Catherine A. Ball; Ihab A. B. Awad; Janos Demeter; Jeremy Gollub; Joan M. Hebert; Tina Hernandez-Boussard; Heng Jin; John C. Matese; Michael Nitzberg; Farrell Wymore; Zachariah K. Zachariah; Patrick O. Brown; et al. (Nucleic Acids Res., 2005)

A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. - Tim F. Rayner; Philippe Rocca-Serra; Paul T. Spellman; Helen C. Causton; Anna Farne; Ele Holloway; Rafael A. Irizarry; Junmin Liu; Donald Maier; Michael Miller 001; Kjell Petersen; John Quackenbush; et al. (BMC Bioinform., 2006)

OntologyWidget - a reusable, embeddable widget for easily locating ontology terms. - Catherine Beauheim; Farrell Wymore; Michael Nitzberg; Zachariah K. Zachariah; Heng Jin; Jesse H. Pate Skene; Catherine A. Ball; Gavin Sherlock (BMC Bioinform., 2007)

The Stanford Microarray Database: implementation of new analysis tools and open source release of software. - Janos Demeter; Catherine Beauheim; Jeremy Gollub; Tina Hernandez-Boussard; Heng Jin; Donald Maier; John C. Matese; Michael Nitzberg; Farrell Wymore; Zachariah K. Zachariah; Patrick O. Brown; Gavin Sherlock; et al. (Nucleic Acids Res., 2007)

The XBabelPhish MAGE-ML and XML Translator. - Donald Maier; Farrell Wymore; Gavin Sherlock; Catherine A. Ball (BMC Bioinform., 2008)

The Stanford Tissue Microarray Database. - Robert J. Marinelli; Kelli Montgomery; Chih Long Liu; Nigam H. Shah; Wijan Prapong; Michael Nitzberg; Zachariah K. Zachariah; Gavin Sherlock; Yasodha Natkunam; Robert B. West; Matt van de Rijn; Patrick O. Brown; et al. (Nucleic Acids Res., 2008)

Domain-Specific Data Sharing in Neuroscience: What Do We Have to Learn from Each Other? - John Darrell Van Horn; Catherine A. Ball (Neuroinformatics, 2008)

Implementation of GenePattern within the Stanford Microarray Database. - Jeremy Hubble; Janos Demeter; Heng Jin; Maria Mao; Michael Nitzberg; T. B. K. Reddy; Farrell Wymore; Zachariah K. Zachariah; Gavin Sherlock; Catherine A. Ball (Nucleic Acids Res., 2009)

TB database: an integrated platform for tuberculosis research. - T. B. K. Reddy; Robert Riley 002; Farrell Wymore; Phillip Montgomery; David DeCaprio; Reinhard Engels; Marcel Gellesch; Jeremy Hubble; Dennis Jen; Heng Jin; Michael Koehrsen; Lisa Larson; et al. (Nucleic Acids Res., 2009)

Annotare - a tool for annotating high-throughput biomedical investigations and resulting data. - Ravi Shankar; Helen E. Parkinson; Tony Burdett; Emma Hastings; Junmin Liu; Michael Miller 001; Rashmi Srinivasa; Joseph White; Alvis Brazma; Gavin Sherlock; Christian J. Stoeckert Jr.; Catherine A. Ball (Bioinform., 2010)

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools. - James C. Hu; Gavin Sherlock; Deborah A. Siegele; Suzanne A. Aleksander; Catherine A. Ball; Janos Demeter; Sushanth Gouni; Timothy A. Holland; Peter D. Karp; John E. Lewis; Nathan M. Liles; Brenley K. McIntosh; et al. (Nucleic Acids Res., 2014)

Ancestry inference using reference labeled clusters of haplotypes. - Yong Wang; Shiya Song; Joshua G. Schraiber; Alisa Sedghifar; Jake K. Byrnes; David A. Turissini; Eurie L. Hong; Catherine A. Ball; Keith Noto (BMC Bioinform., 2021)