MASIA: recognition of common patterns and properties in multiple aligned protein sequences. - Hongyao Zhu; Catherine H. Schein; Werner Braun (Bioinform., 2000)

Data mining of sequences and 3D structures of allergenic proteins. - Ovidiu Ivanciuc; Catherine H. Schein; Werner Braun (Bioinform., 2002)

Total sequence decomposition distinguishes functional modules, "molegos" in apurinic/apyrimidinic endonucleases. - Catherine H. Schein; Numan Özgün; Tadahide Izumi; Werner Braun (BMC Bioinform., 2002)

Identifying Property Based Sequence Motifs in Protein Families and Superfamilies: Application to DNase-1 Related Endonucleases. - Venkatarajan S. Mathura; Catherine H. Schein; Werner Braun (Bioinform., 2003)

SDAP: database and computational tools for allergenic proteins. - Ovidiu Ivanciuc; Catherine H. Schein; Werner Braun (Nucleic Acids Res., 2003)

Flavitrack: an annotated database of flavivirus sequences. - Milind Misra; Catherine H. Schein (Bioinform., 2007)

InterProSurf: a web server for predicting interacting sites on protein surfaces. - Surendra S. Negi; Catherine H. Schein; Numan Özgün; Trevor D. Power; Werner Braun (Bioinform., 2007)

Flavitrack analysis of the structure and function of West Nile non-structural proteins. - Petr Danecek; Catherine H. Schein (Int. J. Bioinform. Res. Appl., 2010)

Physicochemical property consensus sequences for functional analysis, design of multivalent antigens and targeted antivirals. - Catherine H. Schein; David M. Bowen; Jessica A. Lewis; Kyung Choi; Aniko Paul; Gerbrand J. van der Heden van Noort; Wenzhe Lu; Dmitri V. Filippov (BMC Bioinform., 2012)