MCVdb: A database for knowledge discovery in Merkel cell polyomavirus with applications in T cell immunology and vaccinology. - Guanglan Zhang; Derin B. Keskin; James A. DeCaprio; Catherine J. Wu; Lou Chitkushev; Vladimir Brusic (BIBM, 2017)

DIISCO: A Bayesian Framework for Inferring Dynamic Intercellular Interactions from Time-Series Single-Cell Data. - Cameron Park; Shouvik Mani; Nicolas Beltran-Velez; Katie Maurer; Satyen Gohil; Shuqiang Li; Teddy Huang; David A. Knowles; Catherine J. Wu; Elham Azizi (RECOMB, 2024)

Tumor-immune partitioning and clustering algorithm for identifying tumor-immune cell spatial interaction signatures within the tumor microenvironment. - Mai Chan Lau; Jennifer Borowsky; Juha P. Väyrynen; Koichiro Haruki; Melissa Zhao; Andressa Dias Costa; Simeng Gu; Annacarolina Da Silva; Tomotaka Ugai; Kota Arima; Minh N. Nguyen; Yasutoshi Takashima; et al. (PLoS Comput. Biol., 2025)